SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17778

Length: 1416 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17778

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7676	2/14
SustainPine v2.0	sp_v2.0_unigene10037	7/14
SustainPine v2.0	sp_v2.0_unigene34190	3/14
SustainPine v2.0	sp_v2.0_unigene79484	2/14

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	rna binding	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	78%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	26S proteasome complex ubiquitin receptor, subunit Rpn13	IPR006773	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXS9

Fln msg: your sequence is shorter than subject: 315 - 376

Fln protein: GRGSTRGGRGPWVRAPAHFEPRRFGGRGGRFIGRGGQVAGRGVKRPLGRNAYPPVPERLPSRHLPPYERVRDRRPPAPAYPRGNARRDYGRRDEPYDDRQVRPSRSASDFATRAAAGRRSSYRDSYANRGPSSYSDSAPPRGVERTASRRPAYPEESYGRRMDKPYRDSRGRDYDNVSGSKRPYSAVEEPPRYEEPAMRNSRARLDYGVSASASHYGDYGESTRLGRGSQLGYTGSARQDSYGLYDGHQSSVGYGGSKPYSSLGRSEAGGTYSSYANDYLSGGADIGGGSYSSLYSSRSMGSGYLPGSGSGSYY*

Protein Length: 316

Fln nts: TGGTCGTGGCAGTACACGTGGTGGCAGGGGCCCATGGGTTCGTGCTCCTGCCCATTTTGAGCCCCGGAGGTTTGGAGGTCGTGGTGGCCGTTTCATTGGACGAGGAGGTCAAGTTGCAGGTCGTGGAGTAAAGCGTCCTCTGGGGCGCAATGCATATCCACCTGTACCAGAGAGACTCCCAAGTAGGCATTTGCCACCCTATGAAAGGGTACGAGATAGGCGCCCGCCAGCTCCGGCATATCCAAGAGGTAATGCAAGGAGGGATTATGGAAGACGAGACGAACCTTATGATGATCGTCAAGTGCGACCTAGTCGATCAGCTTCTGATTTTGCTACTCGTGCTGCTGCGGGAAGGCGGTCATCCTATAGAGATAGTTATGCAAATCGTGGGCCTAGCAGCTATTCAGACAGTGCACCTCCTCGAGGGGTGGAAAGGACTGCATCACGTAGACCTGCCTATCCAGAAGAAAGCTATGGTCGACGCATGGATAAGCCTTATCGTGATAGCCGTGGTCGTGATTATGACAATGTTTCTGGATCAAAACGTCCATATTCAGCAGTGGAAGAACCACCTAGATATGAAGAACCAGCTATGAGGAATTCGAGGGCGCGCTTAGACTACGGTGTCAGTGCTAGTGCATCACACTATGGGGATTATGGTGAATCCACTAGACTTGGGAGAGGCTCCCAGCTAGGCTATACGGGTAGTGCTAGACAGGACTCATATGGCTTATATGATGGACACCAATCTAGTGTGGGCTATGGAGGAAGTAAACCATACAGTTCTCTTGGGCGCAGTGAAGCTGGTGGAACATATTCAAGCTATGCCAATGATTATTTGTCCGGTGGGGCTGATATCGGTGGAGGTTCTTATTCTTCTCTGTATTCAAGCCGCAGTATGGGTAGTGGATACTTACCTGGCAGTGGCTCTGGATCCTATTATTAA___ATTATTTGTGTTCACGAGGATGTTGTAGGCTGGCATAGATTCAGAGCCTGTGATGCGTATGATTACTTTGGTAGTTTTCACCAGCTAAAACCCAGCCTTCAGTTATTATTGATAAAGAGAAGCCTCTTTGATTTGAGGTTGAATTTAATGGATGGATGTAAGTGGGCGCCATAAAACTAGACAAGCTACAAGTAATGGGTTCAAAAGATTTCAAAAGATAGTGAAGGTAGCAGTGTGTGGCAAAAGATATTTGATTCCTGATGTGGGATGATATATAGGCGGGAGATGAATTCAGACAATTGTTATTTACATGTAGCCAAGATTATTCTTTTTTGGTAGGATTTTGTGGTGCAAGGACTATGACAGATAAAGATTTTATGCAATTGAAAGTGCATGTAAGAGTATATTTCAGTTTTATGGTTTTAAGGTGCTCTGCAAATATTTACATATAAGTGCAATCTCAGCTGCTT

Fln Alignment:

biogeco2_mira_c16115___DYGRRDEPYDDRQVRPSRSASDFATRAAAGRRSSYRDSYANRGPSSYSDSAPPRGVERTASRRPAYPEESYGRRMDKPYRDSRGRDYDNVSGSKRPYSAVEEPPRYEEPAMRNSRARLDYGVSASASHYGDYGESTRLGRGSQLGYTG-SARQDSYGLYDGHQSSV--GYGGSKPYSSLGRSEAGGTYSSYANDYLSGGADI
A9NXS9__________________DYGRRDEPYDDRQVRSSRSAPDFSTRAAAARRSSYRDSYANRGSGSYSDNAPPRGVSRTVSRRPPYPEESYGRRIDKPYRDSRGRDYDSVSGSKRPYSAVEEPPRYGEPAMRNSRARLDYGVSASASQYGDYGESVRLGRGSQLGYGGSSARQDSYGLYDGHQSRVGSGYGGSKTYGSLGGSEAGGTYSSYGNDYLSSGADI

SNPs (tot: 7)

Position	A %	G %	T %	Probability
843	33		66	0.997452
845		33	66	0.997452
847		33	66	0.997452
976	33		66	0.997464
1061	25		75	0.996473
1065		25	75	0.996473
1066	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain