SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17769

Length: 399 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17769
GAGTTCCTATCCCATCAAGACGTTTCATGGATTCTCAACCTCATTGTGGTCTTCTAATGGATTCCAAGGAAAGAGGGAGTTATCTGCATATACAAAACTGGTATCATCATGTAGATGCTCAAGCACAATTGACCAGTTGGCCAATCTGCGTGAGAAAGCAAGGGCGGTCGTCCAATTTGATTCAAGGAGTACCTGCAATCCAAGGCAATCTCAGTCAATGAGGCACTGGAAAGGGCTGTCCCTCTTCGTTATCCTGAAAAAATACATGAAGCTATGAGGTATTCTCTTCTAGCAGGAGGGAAGCGGGTTCGTCCTGTTCTCTGCATTGCAGCATGCGAGCTTGTGGGAGGGACCGAGGAGCTCGCCATGCCAACTGCCTGTGCAATGGAGATGATCCAC

Ace file of the UniGene biog2_v2.0_unigene17769 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene69672	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Geranyl diphosphate synthase n=1 Tax=Abies grandis RepID=Q8LKJ3_ABIGR	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	geranylgeranyl diphosphate synthase	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Terpenoid synthase	IPR008949	-	-
Sma3	Polyprenyl synthetase-related	IPR017446	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRU8

Fln msg: Overlapping hits, possible frame ERROR between 181 and 181, Distance to subject end: 220 aas, your sequence is shorter than subject: 133 - 382

Fln protein: SSYPIKTFHGFSTSLWSSNGFQGKRELSAYTKLVSSCRCSSTIDQLANLREKARAVVQFxxKEYLQSKAISVNEALERAVPLRYPEKIHEAMRYSLLAGGKRVRPVLCIAACELVGGTEELAMPTACAMEMIH

Protein Length: 134

Fln nts: GAGTTCCTATCCCATCAAGACGTTTCATGGATTCTCAACCTCATTGTGGTCTTCTAATGGATTCCAAGGAAAGAGGGAGTTATCTGCATATACAAAACTGGTATCATCATGTAGATGCTCAAGCACAATTGACCAGTTGGCCAATCTGCGTGAGAAAGCAAGGGCGGTCGTCCAATTTxxxxxxAAGGAGTACCTGCAATCCAAGGCAATCTCAGTCAATGAGGCACTGGAAAGGGCTGTCCCTCTTCGTTATCCTGAAAAAATACATGAAGCTATGAGGTATTCTCTTCTAGCAGGAGGGAAGCGGGTTCGTCCTGTTCTCTGCATTGCAGCATGCGAGCTTGTGGGAGGGACCGAGGAGCTCGCCATGCCAACTGCCTGTGCAATGGAGATGATCCAC

Fln Alignment:

biogeco2_mira_c16073___SYPIKTFHGFSTSLWSSNGFQG--KRELSAYTKLVSSCRCSSTIDQLANLREKARAVVQFDFKEYLQSKAISVNEALERAVPLRYPEKIHEAMRYSLLAGGKRVRPVLCIAACELVGGTEELAMPTACAMEMIH
C0PRU8__________________SIPSRRFHGVPTSLWSSNGFQGHLKRQLSAYTFLVSSSRCSSTIAQLANLREEVKEVIKFDFKEYLLSKAMAVNEALDRAVQLRYPEKIHEAMRYSLLAGGKRVRPVLCIAACELVGGTEKLAMPTACAMEMIH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain