SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17760

Length: 247 nt

UniGene Fasta

>biog2_v2.0_unigene17760
ATGGGGATCTCCACGAAGAGCAACTACAAAACTTCTCAAATTAATTTGAGAATCGAATTGCGCCAATTTTAGCTTTCGGAGATGGCAGAAGATGGGCTGGGATCAATTCGTTACGCAGTGATCGATGCATTCACAGACAAACCATTCCAGGGCAATCCTGCTGCTGTGTGTTTACTGGAAGAGAACAAAGATGCAGAGTGGATGCAGAAAGTTGCCAATGAGTTCAATCTTTCAGAGACTGCTTTCT

Ace file of the UniGene biog2_v2.0_unigene17760

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8027	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Phenazine biosynthesis protein n=3 Tax=Andropogoneae RepID=B6U0C2_MAIZE	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized isomerase bh0283-like	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	0.0	67%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phenazine biosynthesis PhzC/PhzF protein	IPR003719	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTJ4

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 55 - 307

Fln protein: MAEDGLGSIRYAVIDAFTDKPFQGNPAAVCLLEENKDAEWMQKVANEFNLSETAF

Protein Length: 56

Fln nts: ATGGGGATCTCCACGAAGAGCAACTACAAAACTTCTCAAATTAATTTGAGAATCGAATTGCGCCAATTTTAGCTTTCGGAG_-_ATGGCAGAAGATGGGCTGGGATCAATTCGTTACGCAGTGATCGATGCATTCACAGACAAACCATTCCAGGGCAATCCTGCTGCTGTGTGTTTACTGGAAGAGAACAAAGATGCAGAGTGGATGCAGAAAGTTGCCAATGAGTTCAATCTTTCAGAGACTGCTTTCT

Fln Alignment:

biogeco2_mira_c16032___MAEDGLGSIRYAVIDAFTDKPFQGNPAAVCLLEENKDAEWMQKVANEFNLSETAF
A9NTJ4__________________MAGDGLGPIRYAVIDAFTDKPFQGNPAAVCLLEENKDTEWMQKVANEFNLSETAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain