SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17751

Length: 674 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17751 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1041	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SN62_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	zinc finger	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	62%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	Probability
500	75		25	0.996473
518	25	75		0.996473
557	25		75	0.996473
626	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain