SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17735

Length: 882 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17735 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16421	13/17
SustainPine v2.0	sp_v2.0_unigene76823	3/17
SustainPine v2.0	sp_v2.0_unigene80681	1/17

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	expansin-like protein precursor	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
590	44		55		1.0
652	83		16		0.994512
660	16		83		0.994512
684	16		83		0.994512
699		66		33	1.0
717			16	83	0.994512
752	16	83			0.994512
753		16		83	0.994512
754	33		66		1.0
756	20		80		0.995493
768			20	80	0.995493
773		40		60	1.0
777		40		60	1.0
788	40		60		1.0
792	25		50		0.995535
813	50			50	1.0
814	25		75		0.996486
825		50		50	1.0
832		50		50	1.0
833	75	25			0.996474
834	75	25			0.996474
840	66		33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain