SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17732

Length: 1008 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17732

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19368	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] ref\|NP_973987.1\| PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] gb\|AAL87252.1\| unknown protein [Arabidopsis thaliana] gb\|AAM45073.1\| unknown protein [Arabidopsis th	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	upf0326 protein at4g17486-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	-
Sma3	Domain of unknown function DUF862, eukaryotic	IPR008580	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7Y3

Fln msg: Overlapping hits, possible frame ERROR between 647 and 628, atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MENHHPKSGRRRSELVEPGGRRQHWNSCMLKPLRFKGKCGFSMFSRMSAREIVSVEEEAAHVYLNVYDLTQMNGYVYWAGLGVFHSGVEVHGVEYAFGAHDFPTSGVFEVEPRQCPGFTFRKSIYIGTTSLSPSQLREFLEQVAGNYNGDTYHLIAKNCNHFCNDVCLKLTGRSIPGWVNRLAKIGSFCNCLLPESLHVSAVPRRSDYxxxxxxxxLRSSFCRLSGSLATMSTREKNLSVSSMLLQSPLSGSVLPWELKSSTVVKER*

Protein Length: 269

Fln nts: GC_-_ATGGAGAATCATCATCCTAAAAGTGGGAGAAGGAGATCTGAGTTGGTGGAGCCTGGCGGCCGTCGTCAGCACTGGAACTCTTGTATGTTGAAGCCTCTGAGGTTCAAGGGAAAATGTGGGTTCAGTATGTTCTCTAGAATGTCAGCCAGAGAAATTGTTTCAGTTGAGGAAGAAGCTGCTCATGTGTATCTCAATGTCTATGACCTCACACAAATGAATGGATATGTTTATTGGGCCGGGCTTGGGGTTTTCCACTCAGGAGTAGAAGTTCATGGTGTGGAGTATGCATTTGGGGCACACGATTTTCCTACTAGTGGTGTGTTTGAGGTCGAGCCTCGTCAATGCCCAGGTTTTACATTTCGTAAATCCATATATATTGGTACTACAAGTCTTAGTCCTTCTCAGCTCAGGGAGTTCTTAGAGCAGGTCGCAGGAAACTACAATGGAGACACATACCACCTTATTGCTAAGAACTGTAATCACTTCTGTAACGATGTCTGCTTGAAATTGACTGGGAGATCCATTCCAGGTTGGGTGAACCGACTGGCGAAAATTGGGTCATTCTGCAACTGTCTGCTGCCAGAGAGTCTTCATGTGTCTGCAGTACCACGACGATCTGATTATxxxxxxxxxxxxxxxxxxxxxxxxCTAAGAAGTTCTTTTTGTCGGTTATCTGGCAGTCTTGCTACCATGTCTACAAGAGAAAAGAATCTCTCTGTTTCATCCATGTTGCTGCAGTCACCCTTGAGTGGAAGTGTGCTGCCTTGGGAATTGAAAAGTTCTACTGTGGTGAAGGAAAGGTAG___GGAAAATTGTTATAATTATGTTTTGACGCTCTGTAACTGATTGCTTACATAAGTGTGAAAATGCTTGACACCACGAAGAGGTAAGAGAAATGTAACCAAGGTGCAGAATCCAGGTTCTTGATGCATAGTAACACCTGGGCATGCTTTGGGGTGCAGTATTCTTTGAGGGTGATCTTGACATTAAATAGTGGTACCACGGATTCC

Fln Alignment:

biogeco2_mira_c15826___MENHHPKSGRRRSELVEPGGRRQHWNSCMLKPLRFKGKCGFSMFSRMSAREIVSVEEEAAHVYLNVYDLTQMNGYVYWAGLGVFHSGVEVHGVEYAFGAHDFPTSGVFEVEPRQCPGFTFRKSIYIGTTSLSPSQLREFLEQVAGNYNGDTYHLIAKNCNHFCNDVCLKLTGRSIPGWVNRLAKIGSFCNCLLPESLHVSAVPRRSDYQxxxxxxKLRSSFCRLSGSLATMSTREKNLSVSSMLLQSPLSGSVLPWELKSSTVVKER
D5A7Y3__________________MENHHPKVGRRRSESLEPGGRRQHWNSCMLKPLRLKGKCGFSMFSRMSAREIASVEDEATHVYLNVYDLTPMNGYVYWAGLGVFHSGVEVHGVEYAFGVHDFPTSGVFEVEPRQCPGFTFRKSIYIGTTNLSPSQLREFLEQLAGNYNGDTYHLIAKNCNHFCNDICLKLTGNSIPGWVNRLAKIGSFRNCLLPESLHVSAVPRRPDYQxxxxxxKLRSSFCRLSGSLATLSTRERNLSVSSMLLHSPLSGSVLPWELKSSAVVKER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain