SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17698

Length: 574 nt

UniGene Fasta

>biog2_v2.0_unigene17698
ATGGGGACCGATACTGGTTTCTGGTTTACCGTCATGTTTCCCGGACCGAAGCCGCTGGTTTTCAGAACGGCTGATACTTTCTGAACCCACAGCCGAGCGAGACCAGGGTCTTTGGATTTCGATCCATGATCGAGTCCTTCCGTTATGCGAAGTTTATGTTCCCTAAATCTGCCAACAAAATAATTATTTGGCATACGACGTGGAGCTCGGTTTACTGATTTGCATACCGAACATCTCTGGTTTTGCTTATTGTGCTGGTTCAAATCAGGGTTTCGATGCATTCTCCATTAACACTCCTGCTCCTGTAAATTATCGAGCTATGTCGGTGGCAGAGCTTAGGGAACGTCATGCAGCGGCAACGGCAAAGGTTAACGCTCTCAGAGAACGGATAAAGGCTAAGCGCCTCCAGCTGTTGGATACAGACGTTGCAACGTATGCCAGCAGTAATGGAAGGACCCCAATCAGCTTCAGCTTCACGGATCTGGTTTGCTGTAGAACACTTCAAGGTCACACAGGAAAAGTTTATTCATTGGACTGGACATCTGAGAAAAATCGCATTGTGAGCGCATCTCAA

Ace file of the UniGene biog2_v2.0_unigene17698

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13627	11/12
SustainPine v2.0	sp_v2.0_unigene79681	1/12

Source	Descriptions	Term	Type	Identity
AutoFact	Guanine nucleotide-binding protein subunit beta-1 n=9 Tax=core eudicotyledons RepID=GBB1_TOBAC	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	g protein beta subunit	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	88%
Blast2go	histone acetylation	GO:0016573	Biological Process	88%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	88%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	G-protein, beta subunit	IPR001632	-	-
Sma3	Guanine nucleotide-binding protein, beta subunit	IPR016346	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPY7

Fln msg: Distance to subject end: 292 aas, your sequence is shorter than subject: 85 - 377

Fln protein: MSVAELRERHAAATAKVNALRERIKAKRLQLLDTDVATYASSNGRTPISFSFTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQ

Protein Length: 86

Fln nts: ATGGGGACCGATACTGGTTTCTGGTTTACCGTCATGTTTCCCGGACCGAAGCCGCTGGTTTTCAGAACGGCTGATACTTTCTGAACCCACAGCCGAGCGAGACCAGGGTCTTTGGATTTCGATCCATGATCGAGTCCTTCCGTTATGCGAAGTTTATGTTCCCTAAATCTGCCAACAAAATAATTATTTGGCATACGACGTGGAGCTCGGTTTACTGATTTGCATACCGAACATCTCTGGTTTTGCTTATTGTGCTGGTTCAAATCAGGGTTTCGATGCATTCTCCATTAACACTCCTGCTCCTGTAAATTATCGAGCT_-_ATGTCGGTGGCAGAGCTTAGGGAACGTCATGCAGCGGCAACGGCAAAGGTTAACGCTCTCAGAGAACGGATAAAGGCTAAGCGCCTCCAGCTGTTGGATACAGACGTTGCAACGTATGCCAGCAGTAATGGAAGGACCCCAATCAGCTTCAGCTTCACGGATCTGGTTTGCTGTAGAACACTTCAAGGTCACACAGGAAAAGTTTATTCATTGGACTGGACATCTGAGAAAAATCGCATTGTGAGCGCATCTCAA

Fln Alignment:

biogeco2_mira_c15647___MSVAELRERHAAATAKVNALRERIKAKRLQLLDTDVATYASSNGRTPISFSFTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQ
B8LPY7__________________MSVAELRERHVAATAKVNALRERIKDKRRQLLDTDVATYASNNGRTPISFSFTDLVCCRTLQGHTGKVYSLDWTSEKNRIVSASQ

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
434	14		85		0.993533
439		28	71		1.0
474		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain