SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17690

Length: 1156 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene17690

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene115	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] dbj\|BAD30726.1\| putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	probable serine threonine-protein kinase at1g54610-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Gonadotropin-releasing hormone	IPR002012	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Xylan biosynthesis protein IRX15/IRX15L	IPR006514	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXN0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 137 aas, your sequence is shorter than subject: 186 - 575

Fln protein: YKARDIDTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGSTFTEPQVKCYLHQLLSGLEHCHSRGVLHRDIKGSNLLLDNGGILKIADFGLATFYNPDQKQPMTSRVVTLWYRPPELLLGATEYDATVDLWMLVASWQNYWQANQ*

Protein Length: 187

Fln nts: TTTACAAGGCTCGAGATATAGATACTGGGAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTGGAACCTGAAAGTGTAAAGTTTATGGCAAGGGAGATTTTGGTCTTGCGACGGCTTGATCATCCTAATGTGGTCAAACTGGAGGGATTGGTAACCTCGAGAATGTCTTGCAGTTTGTATCTTGTATTTGAATACATGGAGCATGATCTTGCAGGTCTTGCAGCTTCTCCAGGAAGCACTTTTACTGAACCTCAGGTAAAATGCTATTTGCATCAGTTGCTTTCAGGGCTTGAACACTGTCACAGCAGAGGTGTCTTGCATCGTGATATTAAGGGTTCCAATCTGCTTCTTGACAATGGAGGCATATTGAAAATTGCTGATTTTGGTTTGGCTACATTTTACAATCCTGATCAGAAGCAACCTATGACTAGTCGTGTAGTTACCCTTTGGTATCGGCCCCCGGAACTATTGTTAGGGGCTACAGAGTATGATGCAACTGTTGATCTTTGGATGCTGGTTGCCTCCTGGCAGAATTATTGGCAGGCAAACCAATAATGCCTGGACGCACAGAGGTAGAGCAGTTGCACAAAATATTTAAGCTCTGTGGTTCACCATCAGAGGAGTATTGGAAAAAGTCCAAGTTGCCACATGCAACTATTTTCAAGCCACAACAGCCATATAAACGTTGTATACGAGAGACTTTTAAAGATTTCCCATCATCTTCCTTATCACTTATTGAAACTATTCTGTCAATTGATCCAGCAGATCGTGGTACTGCTTCTGCCGCATTGAAGAATGAATTTTTCACGACCAAGCCTTATGCTTGTGATCCATCAAGCTTGCCTCAGTATCCTCCAAGCAAGGAAATGGATGCAAAAATGCGCGATGAAGAATCTAGAAGGCAAAGAGCAGCCAGCGGAAAATTTCGTAGTGGTGATGGCACAAGGAAGACAGGCATCAGGGATCGGGAAGGCAGAGCTGTTCCTGCACCAGAAGCAAATGCAGAGCTCCCTGTGAATTTGCAAAAGCGAAGGATGATTTCACAGTCCAATGCTAAGAGTAAGAGTGAGAAGTTTCCTCCACCACATGAAGATGGAGCTGTTGGTTTTCCAATGGAGCCTCCAGGGCAAGGTCAACCATCTTTTGAGCCC

Fln Alignment:

biogeco2_mira_c15624___YKARDIDTGKIVALKKVRFDNLEPESVKFMA-REILVLRRLDHPNVVKLEGLVTS--------------RMSCSLYLVFEYMEHDLAGLAASPGSTFTEPQVKCYLHQLLSGLEHCHSRGVLHRDIKGSNLLLDNGGILKIADFGLATFYNPDQKQPMTSRVVTLWYRPPELLLGATEYDATVDLW
A9NXN0__________________YMAKEIETGEIVALKKIRMDN-EREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMW

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
537		66		33	0.997453
539		33	66		0.997454
542	66		33		0.997456
543			33	66	0.997456
544			33	66	0.997464
754		33		66	0.997452
856			33	66	0.997452
980	25		75		0.996473
1027		33		66	0.997452
1139	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain