SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17685

Length: 1015 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17685 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16793	12/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Iron-sulfur assembly protein IscA-like 2 [Arabidopsis thaliana] sp\|Q8LCY2.2\|ISAM2_ARATH RecName: Full=Iron-sulfur assembly protein IscA-like 2, mitochondrial; Flags: Precursor dbj\|BAB08617.1\| unnamed protein product [Arabidopsis thaliana] dbj\|BAD94909.1\|	-	-	1.0e-33	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein aq_1857	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	FeS cluster biogenesis	IPR000361	-	0.0	-
Sma3	FeS cluster insertion	IPR016092	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
447	33		66		0.997452
516	20	80			0.995505
525	80		20		0.995493
535			40	60	1.0
706	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain