SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17671

Length: 553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17671
ATTTTGTCTCAAGAGCAGCACGATTGTCTGGGGAGAGCCTGAAAGAACTAAAGGAGTTGGATTCTTCTGTTATTGAGGGAAGAGGATTTCTGTCAGTTTGGCTGATGCGCCTGAAACGCTGGACTGTCTCAAAGTCCCAGCATCTTAACTTCTTTACTATTCTTATCCTTGCATCTGTACCAAATCCCTTGTTTGATCTTGCAGGCATGATGTGTGGGCAACTTTCAGTTCCATTCTGGAAATTCTTCATTGCAACCTTAATTAGGAAAGGCAATAATTAAAACACATATACAGACAATTTTTATCATCCTGGTTTGCAACAACCAACTGCTGGAGTGGGTTGAAAATGAGTTTATATTGATACTAGAACACATACCAGTGCTATCTGGTATTTTACCTCATGTTATGAATAAATTGCATACTGCCAAAGAGAGATTTAACCAGCAGCAAAATATGACTCCATTATCATCAAAGGCTAACAAGTGGGATTTCTCATTTGGCACCATTTGGAATACATTTGTCTGGCTTATGCTTATCGGATTCCTCAACAAAA

Ace file of the UniGene biog2_v2.0_unigene17671 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8901	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuole membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RSQ1_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	snare associated golgi protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU2

Fln msg: Overlapping hits, possible frame ERROR between 269 and 262, Distance to subject end: 46 aas, your sequence is shorter than subject: 184 - 449

Fln protein: FVSRAARLSGESLKELKELDSSVIEGRGFLSVWLMRLKRWTVSKSQHLNFFTILILASVPNPLFDLAGMMCGQLSVPFWKFFIATLxxxxAIIKTHIQTIFIILVCNNQLLEWVENEFILILEHIPVLSGILPHVMNKLHTAKERFNQQQNMTPLSSKANKWDFSFGTIWNTFVWLMLIGFLNK

Protein Length: 185

Fln nts: ATTTTGTCTCAAGAGCAGCACGATTGTCTGGGGAGAGCCTGAAAGAACTAAAGGAGTTGGATTCTTCTGTTATTGAGGGAAGAGGATTTCTGTCAGTTTGGCTGATGCGCCTGAAACGCTGGACTGTCTCAAAGTCCCAGCATCTTAACTTCTTTACTATTCTTATCCTTGCATCTGTACCAAATCCCTTGTTTGATCTTGCAGGCATGATGTGTGGGCAACTTTCAGTTCCATTCTGGAAATTCTTCATTGCAACCTTAxxxxxxxxxxxxGCAATAATTAAAACACATATACAGACAATTTTTATCATCCTGGTTTGCAACAACCAACTGCTGGAGTGGGTTGAAAATGAGTTTATATTGATACTAGAACACATACCAGTGCTATCTGGTATTTTACCTCATGTTATGAATAAATTGCATACTGCCAAAGAGAGATTTAACCAGCAGCAAAATATGACTCCATTATCATCAAAGGCTAACAAGTGGGATTTCTCATTTGGCACCATTTGGAATACATTTGTCTGGCTTATGCTTATCGGATTCCTCAACAAAA

Fln Alignment:

biogeco2_mira_c15563___FVSRAARXXXXXXXXXXXXXXSVIEGRGFLSVWLMRLKRWTVSKSQHLNFFTILILASVPNPLFDLAGMMCGQLSVPFWKFFIATLxxxAXXXXXXXXXXXILVCNNQLLEWVENEFILILEHIPVLSGILPHVMNKLHTAKERFNQQQNMTPLSSKANKWDFSFGTIWNTFVWLMLIGFLNK
B8LRU2__________________FVSRAARLSGRRPEALEELDASFVEGSGFLSVWLMRLKRWTFSQSQHLNFFTILVLASVPNPLFDLAGIMCGQLSVPFWKFFTATLxxxAIIKTHIQTIFIILVCNNQLLEWVENEFILILEHIPALSYILPHLMDKLHTARERFNHQHNMPPLSSKANKWDFSFATIWNTFVWLMLIGFFNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain