SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17661

Length: 397 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17661
GATGATATTGGCAAGCCATTGCCATCTTCCCAGACAGGTCCTTCTATTAGCACGACTAGTACAGAGAGCGTTCTCTCTACTCCTAGGTTAGAGGAGAAATTGAGAGTATCATCTCAGTTGTTGAAATTCCAATTCAATGAGCTGAAATCTGCCACCAGGAACTTTAGGCCAGAGAGCGTTCTCGGGGGAGGTGGGTTCGGCTATGTTTTCAAAGGTTGGATAGAAGAGAATGGGACAGCCGCCGTCAAGCCTGGCACTGGCCTCACTGTTGCAGTCAAGACACTCAACCTGACGGGTTACAGGGTCACAAGGAATGGCTGGCAGAAGTCAACTTCCTTGGTGAGCTTCGCCATGCAAATCTGGTCAAACTCATTGGATATTGCATTGAAGAAGATCA

Ace file of the UniGene biog2_v2.0_unigene17661 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8819	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine protein kinase-like protein n=1 Tax=Glycine max RepID=C6ZRY6_SOYBN	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	probable receptor-like protein kinase at5g15080-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: Overlapping hits, possible frame ERROR between 297 and 288, Distance to subject end: 270 aas, your sequence is shorter than subject: 132 - 431

Fln protein: DDIGKPLPSSQTGPSISTTSTESVLSTPRLEEKLRVSSQLLKFQFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLxxxxxQGHKEWLAEVNFLGELRHANLVKLIGYCIEED

Protein Length: 133

Fln nts: GATGATATTGGCAAGCCATTGCCATCTTCCCAGACAGGTCCTTCTATTAGCACGACTAGTACAGAGAGCGTTCTCTCTACTCCTAGGTTAGAGGAGAAATTGAGAGTATCATCTCAGTTGTTGAAATTCCAATTCAATGAGCTGAAATCTGCCACCAGGAACTTTAGGCCAGAGAGCGTTCTCGGGGGAGGTGGGTTCGGCTATGTTTTCAAAGGTTGGATAGAAGAGAATGGGACAGCCGCCGTCAAGCCTGGCACTGGCCTCACTGTTGCAGTCAAGACACTCxxxxxxxxxxxxxxxCAGGGTCACAAGGAATGGCTGGCAGAAGTCAACTTCCTTGGTGAGCTTCGCCATGCAAATCTGGTCAAACTCATTGGATATTGCATTGAAGAAGATCA

Fln Alignment:

biogeco2_mira_c15552___DDIGKPLPSSQTGPSISTTSTESVLSTPRLEEKLRVSSQLLKFQFNELKSATRNFRPESVLXXXXXGYVFKGWIEENGTAAVKPGTGLTVAVKTLNxxxLQGHKEWLAEVNFLGELRHANLVKLIGYCIEED
B8LKY1__________________NDIGKTLPTSQTGPSISTASTESIVSTPRLEEQLRVSSQLLKFTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNxxxLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain