SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17610

Length: 427 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17610
TTCTGATGGCAGTGCCAGTGAACAACAGAAGCAACAAGATATCATGACAGGTAATTACCGGCATCAGTTGACGAACCGGCCCTCGGGCACAGTAAACGGACCGAGAAATGATCAAAATTTCTGGCATCTATCACCGTCTCTCGCAGAAAGAATGCATGCAGTCTTTTTCGTTTCTTAAAGAAAATTACGGAGTGAGTGTTCTTGCACAAGTTTGGATGCCAGTGAGACAGGGTGAAAGATTTTATCTAACAACGCGTGAACAGCCCTGTATACTAGGTGGTGGACTTACTGGATATCGGCAAGTGTCAACTGCTTACACTTTCGCTGCAGAAGAAGCTCCAGATGATTTCCCGGGGCTGCCTGGCCGGGTTTTTATGCGGGGAATGCCAGAATGGACTCCAAATGTGCAGTTTTACAATAAAAATGA

Ace file of the UniGene biog2_v2.0_unigene17610 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38912	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Protein NLP2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	49%
Blast2go	protein nlp8-like	-	-	9.85233e-28	70%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0JC27

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 702 aas, your sequence is shorter than subject: 141 - 936

Fln protein: LMAVPVNNRSNKIS*QVITGIS*RTGPRAQ*TDREMIKISGIYHRLSQKECMQSFSFLKENYGVSVLAQVWMPVRQGERFYLTTREQPCILGGGLTGYRQVSTAYTFAAEEAPDDFPGLPGRVFMRGMPEWTPNVQFYNKN

Protein Length: 142

Fln nts: TTCTGATGGCAGTGCCAGTGAACAACAGAAGCAACAAGATATCATGACAGGTAATTACCGGCATCAGTTGACGAACCGGCCCTCGGGCACAGTAAACGGACCGAGAAATGATCAAAATTTCTGGCATCTATCACCGTCTCTCGCAGAAAGAATGCATGCAGTCTTTTTCGTTTCTTAAAGAAAATTACGGAGTGAGTGTTCTTGCACAAGTTTGGATGCCAGTGAGACAGGGTGAAAGATTTTATCTAACAACGCGTGAACAGCCCTGTATACTAGGTGGTGGACTTACTGGATATCGGCAAGTGTCAACTGCTTACACTTTCGCTGCAGAAGAAGCTCCAGATGATTTCCCGGGGCTGCCTGGCCGGGTTTTTATGCGGGGAATGCCAGAATGGACTCCAAATGTGCAGTTTTACAATAAAAATGA

Fln Alignment:

biogeco2_mira_c15494___MQSFSFLKENYGVSVLAQVWMPVRQGERFYLTTREQPCILGGGLTGYRQVSTAYTFAAEEAPDDFPGLPGRVFMRGMPEWTPNVQFYNK
Q0JC27__________________LMALSLFRESLGSGALAQVWMPVEQEGHVVLSTCEQPFLLDQVLAGYREVSRHFVFSAKEEPGLQPGLPGRVFISGVPEWTSSVLYYNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain