SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17603

Length: 722 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene17603 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2253	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB22 (Fragment) n=1 Tax=Pinus taeda RepID=C0JTE2_PINTA	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	myb transcription factor	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	75%
Blast2go	response to UV-B	GO:0010224	Biological Process	75%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	75%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	75%
Blast2go	DNA binding	GO:0003677	Molecular Function	75%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3		IPR012287	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	SANT/Myb domain	IPR001005	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
398	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
105	119	TCTCA TCTCA TCTCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain