SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17559

Length: 397 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17559
TGGACCTCAAAGACCTGGATGGCCAAAAAGAAGCAAGGTTGTCGAAGAAATCCGACGTGCCTGTGAGGAGGATGGTTTTTCCAGATTGTGAACCATGGCGTCCCAGAGGCAGTCATGAAAAGTATGATGGGAATTGCCAAGGAATTCTTCGAAATGCCTGTCGAAGACAGAGCATGCCTCTACTCAGAGGACCCAAATCAGAATGTTCGGCTTTCTACGAGCTTCAATATTGCCAAAGAAAAGTCCTTAACTGGAGAGATTATCTGCTGCATCCATGTCATCCTCTGGAAGAAGTGATAGGCTCTTGGCCTGAAAAGCCTGCAGCTTACAGAGAAATTGCAAGTAAATATGCTATAGAAGTGAGAGCACTGGTTCTAAGACTGCTGGCTTCCATTTC

Ace file of the UniGene biog2_v2.0_unigene17559 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23584	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03425.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=297.8, E=1.3e-85, N=1) [Arabidopsis thaliana] emb\|CAB40043.1\| putative Fe(II)/a	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	2og-fe oxygenase family protein	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE21

Fln msg: Overlapping hits, possible frame ERROR between 88 and 76, and overlapping frame ERROR between 243 and 231, Distance to subject end: 169 aas, your sequence is shorter than subject: 132 - 357

Fln protein: GPQRPGWPKRSKVVEEIRRACEEDxxxxxxNHGVPEAVMKSMMGIAKEFFEMPVEDRACLYSEDPNQNVRLSTSFxxxxxxxLNWRDYLLHPCHPLEEVIGSWPEKPAAYREIASKYAIEVRALVLRLLASI

Protein Length: 133

Fln nts: TGGACCTCAAAGACCTGGATGGCCAAAAAGAAGCAAGGTTGTCGAAGAAATCCGACGTGCCTGTGAGGAGGATxxxxxxxxxxxxxxxxxxAACCATGGCGTCCCAGAGGCAGTCATGAAAAGTATGATGGGAATTGCCAAGGAATTCTTCGAAATGCCTGTCGAAGACAGAGCATGCCTCTACTCAGAGGACCCAAATCAGAATGTTCGGCTTTCTACGAGCTTCAAxxxxxxxxxxxxxxxxxxCCTTAACTGGAGAGATTATCTGCTGCATCCATGTCATCCTCTGGAAGAAGTGATAGGCTCTTGGCCTGAAAAGCCTGCAGCTTACAGAGAAATTGCAAGTAAATATGCTATAGAAGTGAGAGCACTGGTTCTAAGACTGCTGGCTTCCATTTC

Fln Alignment:

biogeco2_mira_c15433___PKRSKVVEEIRRACEEDGxxxxVNHGVPEAVMKSMMGIAKEFFEMPVEDRACLYSEDPNQNVRLSTSFNIxxxxVLNWRDYLLHPCHPLEEVIGSWPEKPAAYREIASKYAIEVRALVLRLLASI
D5AE21__________________PNRTRVIQEIRRACEENGxxxxINHGVKETIMKSMMGIAKEFFEMPVENRACFYSEDPMQPVRVSTSFNIxxxxVQHWRDYLRHPCYPLEEVMGSWPEKPAGYREIAGKYSAEVRALILRLLSSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain