SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17519

Length: 244 nt

UniGene Fasta

>biog2_v2.0_unigene17519
CTGACGAGTAGTAAACTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGTCATGTTCTTGTGCAATGCTTAATTATCTTTGACTACTTTAAGTTCCCAGGAAAAGGTGACAAGGATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAGGCTTATGAGGAGCGTGTAAAGAAGCATCTTGAAATGACACCACCGAAAGGAAGAGAATTTCTCAGTAGCATTGAACACATACTAGAACGTG

Ace file of the UniGene biog2_v2.0_unigene17519

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2324	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	THO complex subunit 1 [Arabidopsis thaliana] gb\|AAL11560.1\|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb\|AAL16253.1\|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb\|AED91456.1\| THO complex subunit 1 [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	80%
Blast2go	tho complex subunit 1-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	0.0	78%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HVB5

Fln msg: Distance to subject end: 244 aas, your sequence is shorter than subject: 81 - 601

Fln protein: LTSSKLMSLELKDPSFRRHVLVQCLIIFDYFKFPGKGDKDGPKESMREEIKAYEERVKKHLEMTPPKGREFLSSIEHILER

Protein Length: 82

Fln nts: CTGACGAGTAGTAAACTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGTCATGTTCTTGTGCAATGCTTAATTATCTTTGACTACTTTAAGTTCCCAGGAAAAGGTGACAAGGATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAGGCTTATGAGGAGCGTGTAAAGAAGCATCTTGAAATGACACCACCGAAAGGAAGAGAATTTCTCAGTAGCATTGAACACATACTAGAACGTG

Fln Alignment:

biogeco2_mira_c15390___LTSSKLMSLELKDPSFRRHVLVQCLIIXXXXXXXXXXXXXXXXESMREEIKAYEERVKKHLEMTPPKGREFLSSIEHILER
F6HVB5__________________LTSSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLEMTPPKGKEFLHNIEHILER

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain