SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17498

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17498
CAAAAGAATGTATCTACATCAAGAAAGTGGCATCCAATCTCACCGGGCTTCTATGATGTCACTACCAAGTGTACATGGTCCAGGTGAGATGGAACCCATCCAAGCAGCAGCCTTAGTAAGTCAACCGGCATTGTATGGCAAAGAGTTGTTGCAAGAACATCCAGTAGGACCTGCTATGGTACATCCTTCTGAAACGGCCGTGAAAGGCCCTAATTGGACTGATCTGTTTGAAGGAGGAGTTAAGCGTGCTTTGATTGTGGGAATAGGAATCCAAATTCTTGAGCAGTTTGCTGGTATTAATGGAGTCCTATATTATACACCTCAAATTCTTGAAGAGGCAGGTGTAGAGGTTCTTCTGGCGAATATGGGCATAGGGTCGGACTCAGCGTCACTTCTGATCAGTGCATTAACAAGTTTGTTGATG

Ace file of the UniGene biog2_v2.0_unigene17498 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9963	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9S3N8_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	monosaccharide-sensing protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	transporter activity	GO:0005215	Molecular Function	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXP9

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 141 - 388

Fln protein: KRMYLHQESGIQSHRASMMSLPSVHGPGEMEPIQAAALVSQPALYGKELLQEHPVGPAMVHPSETAVKGPNWTDLFEGGVKRALIVGIGIQILEQFAGINGVLYYTPQILEEAGVEVLLANMGIGSDSASLLISALTSLLM

Protein Length: 142

Fln nts: CAAAAGAATGTATCTACATCAAGAAAGTGGCATCCAATCTCACCGGGCTTCTATGATGTCACTACCAAGTGTACATGGTCCAGGTGAGATGGAACCCATCCAAGCAGCAGCCTTAGTAAGTCAACCGGCATTGTATGGCAAAGAGTTGTTGCAAGAACATCCAGTAGGACCTGCTATGGTACATCCTTCTGAAACGGCCGTGAAAGGCCCTAATTGGACTGATCTGTTTGAAGGAGGAGTTAAGCGTGCTTTGATTGTGGGAATAGGAATCCAAATTCTTGAGCAGTTTGCTGGTATTAATGGAGTCCTATATTATACACCTCAAATTCTTGAAGAGGCAGGTGTAGAGGTTCTTCTGGCGAATATGGGCATAGGGTCGGACTCAGCGTCACTTCTGATCAGTGCATTAACAAGTTTGTTGATG

Fln Alignment:

biogeco2_mira_c15366___DLFEGGVKRALIVGIGIQILEQFAGINGVLYYTPQILEEAG
A9NXP9__________________DLFQRKYARAVIVGVGLMLLQQFCGINAVIFYASSIFKAAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain