SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17445

Length: 465 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17445
GTCATTACTGGGCAGAGAAAGGGATGGCTTGAAAGCAATAATTCTTCCTATGATGAGGAGGAAGCAGTTGCTCTGAAGAGGCAGAAGGTTGGAGATGGATCTACTCTTGAGAGATCCAAGGAGAAGCGAATTCAGGAGCTAGAGGCTGCCCTTTCAGAGTCTGAGCGCAACATGAAACAGCTTGAACAGGATTTGGAAGAGCAGGGAGAGAATCTGAAGAATCAACACCGCAAGACAGAATTGCTCTATCAGGAACTTGATGATGCATTGAGGAAAATAAAATCGCTAGAGCGTGAGGGGATCGCCTTAGATGTGAAAATGCTATATTTGAAGCCAAGCTTGGGTATGGTGATTTTTAATGTTGCAACAACAAAGGTCTTGCGCATGGTGAATACCCTGGGGACAGATAACCAGACAAAGGACACAATAGAGTCTCTGCGAGCGGAACTACAGAGACTTCAGGCA

Ace file of the UniGene biog2_v2.0_unigene17445 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3280	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	mitotic spindle assembly checkpoint protein MAD1 [Arabidopsis thaliana] dbj\|BAA97009.1\| mitotic checkpoint protein-like [Arabidopsis thaliana] gb\|AED95867.1\| mitotic spindle assembly checkpoint protein MAD1 [Arabidopsis thaliana]	-	-	37%
FL-Next	tr=Spindle assembly checkpoint component mad1, putative; Ricinus communis (Castor bean).	-	-	42%
Blast2go	spindle assembly checkpoint component	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitotic checkpoint	IPR008672	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SPB2

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 155 - 728

Fln protein: VITGQRKGWLESNNSSYDEEEAVALKRQKVGDGSTLERSKEKRIQELEAALSESERNMKQLEQDLEEQGENLKNQHRKTELLYQELDDALRKIKSLEREGIALDVKMLYLKPSLGMVIFNVATTKVLRMVNTLGTDNQTKDTIESLRAELQRLQA

Protein Length: 156

Fln nts: GTCATTACTGGGCAGAGAAAGGGATGGCTTGAAAGCAATAATTCTTCCTATGATGAGGAGGAAGCAGTTGCTCTGAAGAGGCAGAAGGTTGGAGATGGATCTACTCTTGAGAGATCCAAGGAGAAGCGAATTCAGGAGCTAGAGGCTGCCCTTTCAGAGTCTGAGCGCAACATGAAACAGCTTGAACAGGATTTGGAAGAGCAGGGAGAGAATCTGAAGAATCAACACCGCAAGACAGAATTGCTCTATCAGGAACTTGATGATGCATTGAGGAAAATAAAATCGCTAGAGCGTGAGGGGATCGCCTTAGATGTGAAAATGCTATATTTGAAGCCAAGCTTGGGTATGGTGATTTTTAATGTTGCAACAACAAAGGTCTTGCGCATGGTGAATACCCTGGGGACAGATAACCAGACAAAGGACACAATAGAGTCTCTGCGAGCGGAACTACAGAGACTTCAGGCA

Fln Alignment:

biogeco2_mira_c15301___KRQKVGDGSTLERSKEKRIQELEAALSESERNMKQLEQDLEEQGENLKNQHRKTELLYQELDDALRKIKSLEREGIALDVKMLYLKPSLGMVIFNVATTKVLRMVNTLGTDNQTKDTIESLRAELQR
B9SPB2__________________KNEQAGD----ESASGTLLQEFESSLLKKECYIKELESNLHEQKEASNRQLDEIKLLNDRLNNEARRFKSLERESDRLRSEISLLESKLGHGDFSAANTKVLRMVNTLGVDNDAKQTIEALRTELEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain