SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17385

Length: 297 nt

UniGene Fasta

>biog2_v2.0_unigene17385
ATGGGAGGTTCATAAGCAAGGGAATGCTGTTGGAAGAGCAGTGGATCTATCAAAAACTCCGTGGATACGATGAACTTATACGTGAATTGGAGCATCTTTTCAACATGGAAGGCTTACTAAGCACCCCTGAAAAGGGGTGGCATATTGTTTACACAGATAATGAAGGCGATATAATGCTTGTTGGAGATGATCCTTGGCAGGAATTTTGTAACATAGTCTGTAAAATACTGATATGCACTCAGGAAGAGGTGCAAAAGATGACACCTGGCATGTTCAGTGAGGATGCTCAGAGCTGTT

Ace file of the UniGene biog2_v2.0_unigene17385

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27236	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ARF-L2 protein (Fragment) n=1 Tax=Ginkgo biloba RepID=D4HTT9_GINBI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	auxin response factor 2	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of cellular process	GO:0048523	Biological Process	61%
Blast2go	floral organ development	GO:0048437	Biological Process	61%
Blast2go	protein binding	GO:0005515	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW7

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 98 - 920

Fln protein: GRFISKGMLLEEQWIYQKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSC

Protein Length: 99

Fln nts: ATGGGAGGTTCATAAGCAAGGGAATGCTGTTGGAAGAGCAGTGGATCTATCAAAAACTCCGTGGATACGATGAACTTATACGTGAATTGGAGCATCTTTTCAACATGGAAGGCTTACTAAGCACCCCTGAAAAGGGGTGGCATATTGTTTACACAGATAATGAAGGCGATATAATGCTTGTTGGAGATGATCCTTGGCAGGAATTTTGTAACATAGTCTGTAAAATACTGATATGCACTCAGGAAGAGGTGCAAAAGATGACACCTGGCATGTTCAGTGAGGATGCTCAGAGCTGTT

Fln Alignment:

biogeco2_mira_c15225___KLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSC
B8LRW7__________________KLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain