SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17380

Length: 432 nt

UniGene Fasta

>biog2_v2.0_unigene17380
GTAGTTGTTGTTGACGACGATGATGATGCATCTCTTGATGAAGATGAACAAGCATTTAGTCAGAAGAAGCAATCAAGAAGCTCAAAGCGCAGAACAAGGCAAGCTAGAGCTCTCGAGAATGCAAAGAAGGCACCTAGAAATTTTATGGAGCTCTTACAAGAGGCAAATTTGGAAGCTTTACCTGCCCATGTACCAACATATTTGCGAGCTGCTGTTGGCCCTCCTAGTTCAACAGCTCGTCGGCATTTCTGTAGTGTTTGTGGCTACCTTGCTTCTTACACATGTGTACAATGCGGAGCTCGTTTTTGCTCATGTCGATGCCAAGTAATACATGGTGATACACGTTGTATGAAGTTTGTTGCTTGATAAACACTTTTGTTGGAGGCTGTGATATGTGGATATGAGTTATTGCTAAACCTGTTAAAGCAGGAG

Ace file of the UniGene biog2_v2.0_unigene17380

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25977	1/2
SustainPine v2.0	sp_v2.0_unigene35325	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein [Nicotiana benthamiana]	-	-	1.96182e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	zinc finger hit domain-containing protein 1	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	79%
Blast2go	regulation of developmental growth	GO:0048638	Biological Process	79%
Blast2go	regulation of flower development	GO:0009909	Biological Process	79%
Blast2go	identical protein binding	GO:0042802	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, HIT-type	IPR007529	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG3

Fln msg: your sequence is shorter than subject: 122 - 174

Fln protein: VVVVDDDDDASLDEDEQAFSQKKQSRSSKRRTRQARALENAKKAPRNFMELLQEANLEALPAHVPTYLRAAVGPPSSTARRHFCSVCGYLASYTCVQCGARFCSCRCQVIHGDTRCMKFVA*

Protein Length: 123

Fln nts: GTAGTTGTTGTTGACGACGATGATGATGCATCTCTTGATGAAGATGAACAAGCATTTAGTCAGAAGAAGCAATCAAGAAGCTCAAAGCGCAGAACAAGGCAAGCTAGAGCTCTCGAGAATGCAAAGAAGGCACCTAGAAATTTTATGGAGCTCTTACAAGAGGCAAATTTGGAAGCTTTACCTGCCCATGTACCAACATATTTGCGAGCTGCTGTTGGCCCTCCTAGTTCAACAGCTCGTCGGCATTTCTGTAGTGTTTGTGGCTACCTTGCTTCTTACACATGTGTACAATGCGGAGCTCGTTTTTGCTCATGTCGATGCCAAGTAATACATGGTGATACACGTTGTATGAAGTTTGTTGCTTGA___TAAACACTTTTGTTGGAGGCTGTGATATGTGGATATGAGTTATTGCTAAACCTGTTAAAGCAGGAG

Fln Alignment:

biogeco2_mira_c15220___ASLDEDEXXXXXXXXXXXXXXXXXXXXXLENAKKAPRNFMELLQEANLEALPAHVPTYLRAAVGPPSSTARRHFCSVCGYLASYTCVQCGARFCSCRCQVIHGDTRCMKFVA
D5AEG3__________________ASLDEDEQAFGQKKQSRGSKRRTRQAKALEIAKKAPRNFMELLQEANLEALPAHVPTYLRAAVGPPSSTARRHFCSVCGYIASYTCVQCGARFCSCRCQVIHTDTRCMKFVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain