SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17376

Length: 539 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17376
GTCACCAAGGATTCTACTGATTATCTATGGTATACAACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAATTGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCCGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGCGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTATTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAA

Ace file of the UniGene biog2_v2.0_unigene17376 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7517	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE	-	-	65%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	beta galactosidase 9	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-galactosidase.	EC:3.2.1.23	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	73%
Blast2go	Other glycan degradation	00511	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Sphingolipid metabolism	00600	73%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	beta-galactosidase activity	GO:0004565	Molecular Function	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 179 - 861

Fln protein: VTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQIAGSSSGYWVRVEQPLNLSIGYNEIAILSELIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGAEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMG

Protein Length: 180

Fln nts: GTCACCAAGGATTCTACTGATTATCTATGGTATACAACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAATTGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCCGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGCGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTATTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAA

Fln Alignment:

biogeco2_mira_c15215___TKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQIAG----SSSGYWVRVEQPLNLSIGYNEIAILSELIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGAEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMG
A9NUR2__________________TVDSSDYLWYTTSIQVD--DNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain