SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17348

Length: 501 nt

UniGene Fasta

>biog2_v2.0_unigene17348
ATGGGGATAGTTTTGGGTTTGTTTCGGCTCTCTGAAACCCTTTCTTCTTAATTTCCACCTACAAACCCTAGAATCTCTAACCCTAGTGATTAAATTTCTGCGGCTGGTGTTGCAACCGAAGGGTTCGGATCGCGTGCGGCAGCCATGGCTTGTGTTGCAAAATATCACCGCCCTCCTCATATGCTCGATGAAAATCCCAGGAAGCGTCGAAAGTTAACGTCGTCCTGGGATGTTCTTCCTTCACAGCTTCAGGTCCAGCCAACACTGGTATTTTCTGGGAAGGATTTTGGTATTGTAAGTAGAAATGAAGGGGTGGACGTCCCTTTGTTAGTTGGGACAGAACCCTCCACCCCTTGTTCAGACAGTAGTCGGTCTGCCTCTTCCAATATAAAACCCAAAGAAGAGGGCTCACGGACTGGGTCACCACCATGGCGCAGTGACGACAAGGATGGCCACTACAAGTTCGAACTTGGAGAGAATTTGACGCCTCGATACAAATAC

Ace file of the UniGene biog2_v2.0_unigene17348

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26354	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein kinase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferrochelatase.	EC:4.99.1.1	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Biosynthesis of secondary metabolites	01110		79%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	79%
Blast2go	mRNA processing	GO:0006397	Biological Process	79%
Blast2go	ferrochelatase activity	GO:0004325	Molecular Function	79%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN82

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 119 - 179

Fln protein: MACVAKYHRPPHMLDENPRKRRKLTSSWDVLPSQLQVQPTLVFSGKDFGIVSRNEGVDVPLLVGTEPSTPCSDSSRSASSNIKPKEEGSRTGSPPWRSDDKDGHYKFELGENLTPRYKY

Protein Length: 120

Fln nts: ATGGGGATAGTTTTGGGTTTGTTTCGGCTCTCTGAAACCCTTTCTTCTTAATTTCCACCTACAAACCCTAGAATCTCTAACCCTAGTGATTAAATTTCTGCGGCTGGTGTTGCAACCGAAGGGTTCGGATCGCGTGCGGCAGCC_-_ATGGCTTGTGTTGCAAAATATCACCGCCCTCCTCATATGCTCGATGAAAATCCCAGGAAGCGTCGAAAGTTAACGTCGTCCTGGGATGTTCTTCCTTCACAGCTTCAGGTCCAGCCAACACTGGTATTTTCTGGGAAGGATTTTGGTATTGTAAGTAGAAATGAAGGGGTGGACGTCCCTTTGTTAGTTGGGACAGAACCCTCCACCCCTTGTTCAGACAGTAGTCGGTCTGCCTCTTCCAATATAAAACCCAAAGAAGAGGGCTCACGGACTGGGTCACCACCATGGCGCAGTGACGACAAGGATGGCCACTACAAGTTCGAACTTGGAGAGAATTTGACGCCTCGATACAAATAC

Fln Alignment:

biogeco2_mira_c15180___MACVAKYHRPPHMLDENPRKRRKLTSSWDVLPSQLQVQPTLVFSGKDFGIVSRN-EGVDVPLLVGTEPSTPCSDSSRSASSNIKPKEEGSRTGSPPWRSDDKDGHYKFELGENLTPRYK
A9NN82__________________MACVAKYRRPPHMLDENPRKRRKLTSSWDVLPSQLQVQPTLIFTGKDFGIGSRNGEGQNAPLLAGAGVSIPASDCSRSTSSNIQSKEEGSRSGSPPWRSDDKDGHYMFEIGENLTSRYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain