SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17337

Length: 526 nt

UniGene Fasta

>biog2_v2.0_unigene17337
ATGGGATGGCAAGCTGTGGTGGCATATGTGAATTTAGTGACATACTATCTTGTTGGCTTACCAGTTGGAATTGCTTTAGGATTGAAGACCAGTCTTGGAATCGATGGAATCTGGTGGGGATTAATCCTGGGAGTGGCACTGCAGACGTTAGTACTCATTATTCTTACAGCACGTACTAATTGGAACAAAGAGGTCCAATCGGCGTCGGAGAGAGTTGAGCGTTCCCAGTACGGGGAGCCTGCAGATAACTCAAACGGAGTGGCGATTCCATAAGTTGGATTATTGAAATTAAGAGTGAATCGCATTGCAAAGAAAAGGGCATGCCTAATTTGATGGCAAATCGTTTGTATGATGCGAGGTACATCGATTGGGACAACGGAAATTGAAGAAGTTAGTTAATTCAATTCTTCTGCCAGAGGCTGCTTCTTTTCTTCTTTATAGCGTATTCAAACGAAAGTAGTTCAGGCCACGCGTGCTCGACTTTTGGTTATTGTGGAGAAATGGCCGGTTCTTGTACTGCTTTGAA

Ace file of the UniGene biog2_v2.0_unigene17337

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene878	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp\|Q9LYT3.1\|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb\|CAB86931.1\| putative protein [Arabidopsis thaliana] emb\|C	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	transparent testa 12	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of seed dormancy	GO:0010231	Biological Process	75%
Blast2go	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	75%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	75%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	75%
Blast2go	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	75%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg: your sequence is shorter than subject: 91 - 517

Fln protein: MGWQAVVAYVNLVTYYLVGLPVGIALGLKTSLGIDGIWWGLILGVALQTLVLIILTARTNWNKEVQSASERVERSQYGEPADNSNGVAIP*

Protein Length: 92

Fln nts: ATGGGATGGCAAGCTGTGGTGGCATATGTGAATTTAGTGACATACTATCTTGTTGGCTTACCAGTTGGAATTGCTTTAGGATTGAAGACCAGTCTTGGAATCGATGGAATCTGGTGGGGATTAATCCTGGGAGTGGCACTGCAGACGTTAGTACTCATTATTCTTACAGCACGTACTAATTGGAACAAAGAGGTCCAATCGGCGTCGGAGAGAGTTGAGCGTTCCCAGTACGGGGAGCCTGCAGATAACTCAAACGGAGTGGCGATTCCATAA___GTTGGATTATTGAAATTAAGAGTGAATCGCATTGCAAAGAAAAGGGCATGCCTAATTTGATGGCAAATCGTTTGTATGATGCGAGGTACATCGATTGGGACAACGGAAATTGAAGAAGTTAGTTAATTCAATTCTTCTGCCAGAGGCTGCTTCTTTTCTTCTTTATAGCGTATTCAAACGAAAGTAGTTCAGGCCACGCGTGCTCGACTTTTGGTTATTGTGGAGAAATGGCCGGTTCTTGTACTGCTTTGAA

Fln Alignment:

biogeco2_mira_c15168___GWQAVVAYVNLVTYYLVGLPVGIALGLKTSXXXXXXXXXXXXXVALQTLVLIILTARTNWNKEVQSASERVERSQYGEPAD-NSNGVAIP*VGLL
D5ADQ8__________________GWQALVAYINVGCYYVIGIPLGCLLGFKFDFGVKGIWSGMLGGTCLQTIILLIITYRTNWNKEVEKASHRLSTWDNKAPPNLDGNPDGTPKIGVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain