SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17335

Length: 442 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17335
TTCTCATAATATCTCATCATTTTCATCTCCCAAAACCTCTAGACAAAACAACAGTTAAGCGAGCAAAACCCTTCTCATAATATCTCATCATTTTCATCTCCCAAAACCTCTAGACAAAACAACAGTTAAGCGAGCTGTCGACGAGCGGTGAATTTGCGGCACCAGTAGGACGACGGCGGGAAGGGCTGAACCGTTATCCACGGCTCCTCTGGTTTCTTGCAAGGGCCACTGAAGAAGGTTATTTGGTTTAGTGACAATGAGCAGCAGAGCCAGTCGAACAATATATGTTGGCAACCTGCCTGGCGATATTCGGGAATATGAAGTCGAAGATTTGTTCAATAAGTATGGACCTATTGTTGACATTGATCTGAAAATTCCTCCTCGGCCTCCTGGTTATTGTTTCATTGAGTTTGAGGATGCCCGAGATGCAGAAGATGCAATT

Ace file of the UniGene biog2_v2.0_unigene17335 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34067	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor SR1B [Arabidopsis thaliana] gb\|AEE82170.1\| splicing factor SR1B [Arabidopsis thaliana]	-	-	2.0e-25	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	splicing factor sr1b	-	-	1.49436e-32	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	1.49436e-32	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	1.49436e-32	94%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	1.49436e-32	94%
Blast2go	cellular response to ethylene stimulus	GO:0071369	Biological Process	1.49436e-32	94%
Blast2go	response to biotic stimulus	GO:0009607	Biological Process	1.49436e-32	94%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	1.49436e-32	94%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	1.49436e-32	94%
Blast2go	nuclear speck	GO:0016607	Cellular Component	1.49436e-32	94%
Blast2go	vacuole	GO:0005773	Cellular Component	1.49436e-32	94%
Blast2go	interchromatin granule	GO:0035061	Cellular Component	1.49436e-32	94%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQY2

Fln msg: Distance to subject end: 269 aas, your sequence is shorter than subject: 62 - 331

Fln protein: MSSRASRTIYVGNLPGDIREYEVEDLFNKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAI

Protein Length: 63

Fln nts: TTCTCATAATATCTCATCATTTTCATCTCCCAAAACCTCTAGACAAAACAACAGTTAAGCGAGCAAAACCCTTCTCATAATATCTCATCATTTTCATCTCCCAAAACCTCTAGACAAAACAACAGTTAAGCGAGCTGTCGACGAGCGGTGAATTTGCGGCACCAGTAGGACGACGGCGGGAAGGGCTGAACCGTTATCCACGGCTCCTCTGGTTTCTTGCAAGGGCCACTGAAGAAGGTTATTTGGTTTAGTGACA_-_ATGAGCAGCAGAGCCAGTCGAACAATATATGTTGGCAACCTGCCTGGCGATATTCGGGAATATGAAGTCGAAGATTTGTTCAATAAGTATGGACCTATTGTTGACATTGATCTGAAAATTCCTCCTCGGCCTCCTGGTTATTGTTTCATTGAGTTTGAGGATGCCCGAGATGCAGAAGATGCAATT

Fln Alignment:

biogeco2_mira_c15166___MSSRASRTIYVGNLPGDIREYEVEDLFNKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAI
B8LQY2__________________MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain