SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17332

Length: 286 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17332
CTATACCCGTGTGTGCCTTGAAGGTGACCTTAAAAAATTACACTTCTCAGCTTGAAGGTTATGGCAGCAGTGGAAAATATAATTTAACACAAGCTTTACTGTTTCTCTCTCATTTCATGGGAGATATCCATGAGCCTTTACATGTGGGATTCACCTCGGATGAAGGTGGAAATACAATACAGTTACACTGGTACAAGAGGAAGAGTAATTTGCATCATGTATGGGATAGTTACATCATCGAGAAAGCCATGAAACAATTTTATGACAATGATCTGGAGGTTATGAT

Ace file of the UniGene biog2_v2.0_unigene17332 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22768	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	bifunctional nuclease [Zinnia violacea]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	nuclease s1	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	T/G mismatch-specific endonuclease activity	GO:0043765	Molecular Function	0.0	78%
Blast2go	single-stranded DNA specific endodeoxyribonuclease activity	GO:0000014	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	S1/P1 nuclease	IPR003154	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Phospholipase C/P1 nuclease domain	IPR008947	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACJ2

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 94 - 229

Fln protein: IPVCALKVTLKNYTSQLEGYGSSGKYNLTQALLFLSHFMGDIHEPLHVGFTSDEGGNTIQLHWYKRKSNLHHVWDSYIIEKAMKQFYDNDLEVM

Protein Length: 95

Fln nts: CTATACCCGTGTGTGCCTTGAAGGTGACCTTAAAAAATTACACTTCTCAGCTTGAAGGTTATGGCAGCAGTGGAAAATATAATTTAACACAAGCTTTACTGTTTCTCTCTCATTTCATGGGAGATATCCATGAGCCTTTACATGTGGGATTCACCTCGGATGAAGGTGGAAATACAATACAGTTACACTGGTACAAGAGGAAGAGTAATTTGCATCATGTATGGGATAGTTACATCATCGAGAAAGCCATGAAACAATTTTATGACAATGATCTGGAGGTTATGAT

Fln Alignment:

biogeco2_mira_c15163___VCALKVTLKNYTSQLEGYGS---SGKYNLTQALLFLSHFMGDIHEPLHVGFTSDEGGNTIQLHWYKRKSNLHHVWDSYIIEKAMKQFYDNDLEVM
D5ACJ2__________________VC-LEGAIKNYTSQLETYGSRATGGKYNLTQALLFLSHFMGDVHEPLHVGFTSDEGGNTIQLHWYKRKCNLHHVWDSFIIEKAMKEYYDNDLEVM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
151	75		25		0.996474
153	25		75		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain