SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17324

Length: 535 nt

UniGene Fasta

>biog2_v2.0_unigene17324
GGCGCATTGGGCCGAAGGATTTCCACATGTTTAGGTGTGTTGCTAGGTATGGTTACAAAGACTTACATAAGAAGGATGATAATTTTGAGAAAACGCTCTTGCATAATTTGTCCGTATATATCCAGCATGAATCACTAATGGATAGTTTCTCAGATTCAGAAAAATTGCAGCTTATGTGAAGTCTCTCTACAGGCACTCGCTTTAGACACTGAAAATGCAAGTCAGATGTCTTTAGGCATGGTCTCAGCAGACTTATCACAAAACTCAGTTGTGTCTGAAATATCCCTACAACAATCAGGTCTGCATGTCAGATTTAGTGTTCCTAAGGCTAGAACTGTTGATGATGAATTGCAATTTCTAAATGATTGCAGAGATTCCGGTGTAGTGCATATTCTGGGTAATACTGTAGTAAGGGCAAGAAGCGAATCTGGCTTGATGAAGAAAATTGCAGTAGATTATATCTATGCTTTCCTTCGAAGGATATGCAGGGAAAATAGTGTCGTTCTTAATGTTCCTCACCAAAGCCTCCTAACTG

Ace file of the UniGene biog2_v2.0_unigene17324

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1600	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative potasium transporter [Oryza sativa Japonica Group]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	potassium transporter	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	83%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 59 - 250

Fln protein: RIGPKDFHMFRCVARYGYKDLHKKDDNFEKTLLHNLSVYIQHESLMDSFSDSEKLQLM*

Protein Length: 60

Fln nts: GGCGCATTGGGCCGAAGGATTTCCACATGTTTAGGTGTGTTGCTAGGTATGGTTACAAAGACTTACATAAGAAGGATGATAATTTTGAGAAAACGCTCTTGCATAATTTGTCCGTATATATCCAGCATGAATCACTAATGGATAGTTTCTCAGATTCAGAAAAATTGCAGCTTATGTGAAGTCTCTCTACAGGCACTCGCTTTAGACACTGAAAATGCAAGTCAGATGTCTTTAGGCATGGTCTCAGCAGACTTATCACAAAACTCAGTTGTGTCTGAAATATCCCTACAACAATCAGGTCTGCATGTCAGATTTAGTGTTCCTAAGGCTAGAACTGTTGATGATGAATTGCAATTTCTAAATGATTGCAGAGATTCCGGTGTAGTGCATATTCTGGGTAATACTGTAGTAAGGGCAAGAAGCGAATCTGGCTTGATGAAGAAAATTGCAGTAGATTATATCTATGCTTTCCTTCGAAGGATATGCAGGGAAAATAGTGTCGTTCTTAATGTTCCTCACCAAAGCCTCCTAACTG

Fln Alignment:

biogeco2_mira_c15149___RIGPKDFHMFRCVARYGYKDLHKKDDNFEKTLLHNLSVYIQHESLMDSFSDS
D5A8F8__________________RVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain