SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17311

Length: 457 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17311
GGAAGAAGGCAAACTTAATATTCCTTTTCTTTTGCTGCGAAAGCTTATCCTACCTTTTATTCGTTTACCCTCTTCTGCATTATCCTTCCTATGACTATGTTCCTGCCAGAAGCTGAATTGCCTGCTTGGGTTGTTTGTTATGTGCCTGCTATTATGTCATTATTGAACATTCTACCTGCACCAAGATCTTTCCCTTTCATTATCCCCTACCTCTTGTTCGAGAACACAATGTCTGTCACTAAATTCAATGCCATGATCTCTGGACTGTTTCAACTTGGTAGTGCTTATGAATGGGTGGTAACAAGAAATCAGGTCGGGCATCGGAAACCGATCTACTTGCATTGGTTGAAAGGGAATCACATGTTCAGTTAGAGCACCCAAAGCATCATCGTGGTGTTTCAGAGTCAGGTCTGGATGCCCTCAGCAAGCTTGATGAACAAAGCATCAACAGACCTCC

Ace file of the UniGene biog2_v2.0_unigene17311 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10203	1/2
SustainPine v2.0	sp_v2.0_unigene79632	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative xyloglucan glycosyltransferase 6 [Arabidopsis thaliana] sp\|Q9SRT3.1\|CSLC6_ARATH RecName: Full=Probable xyloglucan glycosyltransferase 6; AltName: Full=Cellulose synthase-like protein C6; Short=AtCslC6 gb\|AAF02144.1\|AC009853_4 unknown protein [Ara	-	-	60%
FL-Next	tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine).	-	-	40%
Blast2go	cellulose synthase-like glycosyltransferase family 2	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	79%
Blast2go	cellulose synthase activity	GO:0016759	Molecular Function	79%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A3QT95

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 27 aas, your sequence is shorter than subject: 124 - 534

Fln protein: GRRQT*YSFSFAAKAYPTFYSFTLFCIILPMTMFLPEAELPAWVVCYVPAIMSLLNILPAPRSFPFIIPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTRNQVGHRKPIYLHWLKGNHMFS*

Protein Length: 125

Fln nts: GGAAGAAGGCAAACTTAATATTCCTTTTCTTTTGCTGCGAAAGCTTATCCTACCTTTTATTCGTTTACCCTCTTCTGCATTATCCTTCCTATGACTATGTTCCTGCCAGAAGCTGAATTGCCTGCTTGGGTTGTTTGTTATGTGCCTGCTATTATGTCATTATTGAACATTCTACCTGCACCAAGATCTTTCCCTTTCATTATCCCCTACCTCTTGTTCGAGAACACAATGTCTGTCACTAAATTCAATGCCATGATCTCTGGACTGTTTCAACTTGGTAGTGCTTATGAATGGGTGGTAACAAGAAATCAGGTCGGGCATCGGAAACCGATCTACTTGCATTGGTTGAAAGGGAATCACATGTTCAGTTAGAGCACCCAAAGCATCATCGTGGTGTTTCAGAGTCAGGTCTGGATGCCCTCAGCAAGCTTGATGAACAAAGCATCAACAGACCTCC

Fln Alignment:

biogeco2_mira_c15132___YSFSFAAKAYPTFYSFTLFCIILPMTMFLPEAELPAWVVCYVPAIMSLLNILPAPRSFPFIIPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVT
A3QT95__________________YGFFFVRKIVAHIVTFVFYCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain