SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17296

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17296
CCCTGCCGGAGTATCACAACTTCGGTCAGACGTTGGCGGCGACTGTAGGTGCGATCGTTGTCTCCGTGGCTTACAGATTGGCTCCGGAGCACCGCCTACCCGCCGCCTACGACGACTGCATCACGGCACTCCAGTGGGTGAACTCACATGCGGGAGCCGGAGGAGACTTCGAACAAGACGCGTGGCTCGAGTCCTTCGCGGACTTTTCCGCGGTGTATCTGATGGGAGACAGCGCTGGTGCCAACATCGCACATCACGTTGTGGCGCTGCGTGGCGGTGTTGAAGCATGGAGCCCATCAGGTTGAGAGGGTCGATACTGGTTCAGCCCTTCTTTGGCGCCGAGCAACGCACACGGTCGGAGAGCGAGTGCCCGCGAGACGCGGTTCTCACTCTGGAGCTGACCGAC

Ace file of the UniGene biog2_v2.0_unigene17296 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4099	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Abhydrolase_3 multi-domain protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	probable carboxylesterase 15-like	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	65%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDXG, active site	IPR002168	-	0.0	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1U1

Fln msg: Overlapping hits, possible frame ERROR between 329 and 293, Distance to subject end: 103 aas, your sequence is shorter than subject: 135 - 327

Fln protein: LPEYHNFGQTLAATVGAIVVSVAYRLAPEHRLPAAYDDCITALQWVNSHAGAGGDFEQDAWLESFADFSAVYLMGDSAGANIAHHVVALRGGVEAWxxxxxxxxxxxxxxFGAEQRTRSESECPRDAVLTLELTD

Protein Length: 136

Fln nts: CCCTGCCGGAGTATCACAACTTCGGTCAGACGTTGGCGGCGACTGTAGGTGCGATCGTTGTCTCCGTGGCTTACAGATTGGCTCCGGAGCACCGCCTACCCGCCGCCTACGACGACTGCATCACGGCACTCCAGTGGGTGAACTCACATGCGGGAGCCGGAGGAGACTTCGAACAAGACGCGTGGCTCGAGTCCTTCGCGGACTTTTCCGCGGTGTATCTGATGGGAGACAGCGCTGGTGCCAACATCGCACATCACGTTGTGGCGCTGCGTGGCGGTGTTGAAGCATGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGGCGCCGAGCAACGCACACGGTCGGAGAGCGAGTGCCCGCGAGACGCGGTTCTCACTCTGGAGCTGACCGAC

Fln Alignment:

biogeco2_mira_c15113___LPEYHNFGQTLAATVGAIVVSVAYRLAPEHRLPAAYDDCITALQWVNSHAGAGGDFEQDAWLESFADFSAVYLMGDSAGANIAHHVVALRGGVEAWSxxxxxxxxxxxxFFGAEQRTRSESECPRDAVLTLELTD
A9P1U1__________________LPDFHNFTLKLAATVGAIVVSVAYRLAPEHRLPAAYDDCISALQWVNSHAGDGGDFKHDPWLESYADFSAVYLMGDSAGGNIAHHVVALRGGVEAWNxxxxxxxxxxxxFFGAEQRTLSESECPCDAVLNLELSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain