SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17287

Length: 276 nt

UniGene Fasta

>biog2_v2.0_unigene17287
GTAAATTTTATGGATGAATAATAACCGCTTGAGAACATTGCCTTCAACTGTAGGAGATTGTTGCTCTCTACTTGAGGCTGATTTCTCTTCGAACCTTTTGGGAGAATTGCCAAGTACTTTGGGAAACCTAGCAAATATAAAGATCTTACAACTTGCAAACAATGGATTAAAATCATTTCCTCCAGAAATTTTGAAGGGTTGTTCACAGCTGTTTACCCTTCATTTACATGGCAACGAAATCACAATTGATTGTCTTCGTGAGGTTGAAGGCTGGTC

Ace file of the UniGene biog2_v2.0_unigene17287

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28122	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat-containing protein [Arabidopsis thaliana] gb\|AAM13067.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91174.1\| unknown protein [Arabidopsis thaliana] gb\|AED91220.1\| leucine-rich repeat-containing protein [Arabidopsis thaliana]	-	-	3.9937e-43	37%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	36%
Blast2go	lrr repeats and ubiquitin-like domain-containing protein at2g30105-like	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 588 aas, your sequence is shorter than subject: 91 - 1145

Fln protein: *ILWMNNNRLRTLPSTVGDCCSLLEADFSSNLLGELPSTLGNLANIKILQLANNGLKSFPPEILKGCSQLFTLHLHGNEITIDCLREVEGW

Protein Length: 92

Fln nts: GTAAATTTTATGGATGAATAATAACCGCTTGAGAACATTGCCTTCAACTGTAGGAGATTGTTGCTCTCTACTTGAGGCTGATTTCTCTTCGAACCTTTTGGGAGAATTGCCAAGTACTTTGGGAAACCTAGCAAATATAAAGATCTTACAACTTGCAAACAATGGATTAAAATCATTTCCTCCAGAAATTTTGAAGGGTTGTTCACAGCTGTTTACCCTTCATTTACATGGCAACGAAATCACAATTGATTGTCTTCGTGAGGTTGAAGGCTGGTC

Fln Alignment:

biogeco2_mira_c15102___ILWMNNNRLRTLPSTVGDCCSLLEADFSSN-LLGELPSTLGNLANIKILQLANNGLKSFPPEILKGCSQLFTLHLHGNEI
Q9FEU2__________________LLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain