SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17282

Length: 399 nt

UniGene Fasta

>biog2_v2.0_unigene17282
ATGGGGATCAGAGGGAAACATAAAATGGTCCAATGATTTACAGTGGCAGAGTTGCCTTATTTAAATGGCGTATGTATGTACGCTCCCCTTCTCACCTGCTCATGTGTCTTTCAGCGCTTGCTCATCACCAACCAGGAGGGTGACTCCTTACCCCAATCCTTGCTCTGCAATAGGCCGGCCATTATATACAGTAGCCAAACGCCCAAATTTTTCTGGCTGTTCCGATGGTGAAGCTCTGAACTTGCCGAGGAGAGGCTTGCTGAAGGGAATTGGAACAACTGGGATTTCAATGTGTGTATCAGTGATAAGTGAGCCCTCTGTTCAAGGTATGGAAAAGCTACCCTTTAAGCCAGAAGGTTATAACTTTTGGACTTGGCGCAATCACAAAATACACTATGT

Ace file of the UniGene biog2_v2.0_unigene17282

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5041	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] emb\|CAB16840.1\| putative protein [Arabidopsis thaliana] emb\|CAB80319.1\| putative protein [Arabidopsis thaliana] gb\|AAM65130.1\| unknown [Arabidopsis thaliana] dbj\|BAE99098.1\| hypothetical pro	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	alpha beta fold family protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	80%
Blast2go	Drug metabolism - other enzymes	00983	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	80%
Blast2go	methyl indole-3-acetate esterase activity	GO:0080030	Molecular Function	80%
Blast2go	methyl jasmonate esterase activity	GO:0080032	Molecular Function	80%
Blast2go	methyl salicylate esterase activity	GO:0080031	Molecular Function	80%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	80%
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVX3

Fln msg: Distance to subject end: 281 aas, your sequence is shorter than subject: 111 - 394

Fln protein: MAYVCTLPFSPAHVSFSACSSPTRRVTPYPNPCSAIGRPLYTVAKRPNFSGCSDGEALNLPRRGLLKGIGTTGISMCVSVISEPSVQGMEKLPFKPEGYNFWTWRNHKIHY

Protein Length: 112

Fln nts: ATGGGGATCAGAGGGAAACATAAAATGGTCCAATGATTTACAGTGGCAGAGTTGCCTTATTTAA_-_ATGGCGTATGTATGTACGCTCCCCTTCTCACCTGCTCATGTGTCTTTCAGCGCTTGCTCATCACCAACCAGGAGGGTGACTCCTTACCCCAATCCTTGCTCTGCAATAGGCCGGCCATTATATACAGTAGCCAAACGCCCAAATTTTTCTGGCTGTTCCGATGGTGAAGCTCTGAACTTGCCGAGGAGAGGCTTGCTGAAGGGAATTGGAACAACTGGGATTTCAATGTGTGTATCAGTGATAAGTGAGCCCTCTGTTCAAGGTATGGAAAAGCTACCCTTTAAGCCAGAAGGTTATAACTTTTGGACTTGGCGCAATCACAAAATACACTATGT

Fln Alignment:

biogeco2_mira_c15097___MAYVCTLPFSPAHVSFSACSSPTRRVTPYPNPCSAIGRPL-YTVAKRPNFSGCSDGEALNLPRRGLLKGIGTTGISMCVSVISEPSVQGMEKLPFKPEGYNFWTWRNHKIHY
A9NVX3__________________MAYACTLPLSPAHASFSVSTSPARRVIPYLNACSAIGRPLKYTVAKSPYFFGCSHGEDLNLPRRGLLKGIGAAGISMCASVISEPSVQGMEKLPFKPEGYNFWTWRNHKIHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain