SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17266

Length: 564 nt

UniGene Fasta

>biog2_v2.0_unigene17266
ATGGGGAAATAATGATGGCTTGTTTATAGGTTGTGTTGCATCAATGGAAAATCTATGGACTGTTGTTATGGATGCAGGAACGAGTTTCACTGCTCAGGTTTACAAACTTTCAAATGCTTTTTTGCACAAGGAATGGATAATGGAACATTGGGAAAAGAATTATTATATCACTGCCTTTAGTGGTTCCTCAAATGGAAGCTCTTTTGTTGTCATGTCTAAAGGTACACTCTATACTCAACAATCATATAAAGTGAGCGATTCATTTCCATTTAAATGGATTAGTAGGAAATGGAAAGAGGGATTTTATGTGACATCAATGGCAACTGCTGGAAATCAATGGGGTGTGGTTATGTCAAGGAATGCAGGGTTTTCAAATCAGGCTGTTGAGCTTGATTTTCTCTATCCAAGTGAAGGTATTCACAGACGCTGGGACAGTGGCTATCGAATAGCTTCTATTGCTGCAACTCCTGATCAAGCTGCATTCATCCTGAGCAAGCCGAAAAAGAAATTGTCAAGTGAAGTACAGGAAACGCTTCGAACATCTGCTTTTCCCAGCACTCATGT

Ace file of the UniGene biog2_v2.0_unigene17266

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4319	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative casein kinase [Arabidopsis thaliana]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	casein kinase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A809

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 187 - 260

Fln protein: WGNNDGLFIGCVASMENLWTVVMDAGTSFTAQVYKLSNAFLHKEWIMEHWEKNYYITAFSGSSNGSSFVVMSKGTLYTQQSYKVSDSFPFKWISRKWKEGFYVTSMATAGNQWGVVMSRNAGFSNQAVELDFLYPSEGIHRRWDSGYRIASIAATPDQAAFILSKPKKKLSSEVQETLRTSAFPSTH

Protein Length: 188

Fln nts: ATGGGGAAATAATGATGGCTTGTTTATAGGTTGTGTTGCATCAATGGAAAATCTATGGACTGTTGTTATGGATGCAGGAACGAGTTTCACTGCTCAGGTTTACAAACTTTCAAATGCTTTTTTGCACAAGGAATGGATAATGGAACATTGGGAAAAGAATTATTATATCACTGCCTTTAGTGGTTCCTCAAATGGAAGCTCTTTTGTTGTCATGTCTAAAGGTACACTCTATACTCAACAATCATATAAAGTGAGCGATTCATTTCCATTTAAATGGATTAGTAGGAAATGGAAAGAGGGATTTTATGTGACATCAATGGCAACTGCTGGAAATCAATGGGGTGTGGTTATGTCAAGGAATGCAGGGTTTTCAAATCAGGCTGTTGAGCTTGATTTTCTCTATCCAAGTGAAGGTATTCACAGACGCTGGGACAGTGGCTATCGAATAGCTTCTATTGCTGCAACTCCTGATCAAGCTGCATTCATCCTGAGCAAGCCGAAAAAGAAATTGTCAAGTGAAGTACAGGAAACGCTTCGAACATCTGCTTTTCCCAGCACTCATGT

Fln Alignment:

biogeco2_mira_c15077___GNNDGLFIGCVASMENLWTVVMDAGTSFTAQVYKLSNAFLHKEWIMEHWEKNYYITAXXXXXXXXXXXXXXKGTLYTQQSYKVSDSFPFKWISRKWKEGFYVTSMATAGNQWGVVMSRNAGFSNQAVELDFLYPSEGIHRRWDSGYRIASIAATPDQAAFILSKPKKKLSSEVQETLRTSAFPSTH
D5A809__________________GNEDGLYISCVASCTNLWAIIMDAGTGFTNQVYDLSAVFLHKDWIMEQWEKNFYISAIAGATNGSSLVVMSKGTPYTQQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain