SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17264

Length: 381 nt

UniGene Fasta

>biog2_v2.0_unigene17264
CGCTGCTAAACCGAATTCTGGTTCTCCCCAGCCCAAAATTTGACTATCAGTATGAACATTCTCTGGACATTCAGCACATGAAGGACTGTCTAGGGAGCAACGCTATAATGACATTCGAGGAGTTTTATAATAAGAAAAGGGACCATTTGGTATCGATAGGTTGATCTGCTACTTGGCCTCACCACCTTGTTACATGGATGATGATCATGTGAGAAAGTTTAAAGGACTAGGATGGTCTATTGGCAAAACAGAGGTCGCTTGGCCTGAGATTCCAAGCTTAAAAGCTATCCTTCACATCCGCATTCAGAAGAAATCGTGAAAAGATTTTCATGCAATGATGAAGTAATTGGAATTGGTGATCTATTTTTGCAGACGTTGAAG

Ace file of the UniGene biog2_v2.0_unigene17264

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5721	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	peptide-O-fucosyltransferase [Arabidopsis thaliana] gb\|AAO22598.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29566.1\| peptide-O-fucosyltransferase [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	gdp-fucose protein-o-fucosyltransferase 2	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	75%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	0.0	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HXK5

Fln msg: Overlapping hits, possible frame ERROR between 149 and 134, Unexpected STOP codon at 3' end. Distance to subject end: 193 aas, your sequence is shorter than subject: 106 - 559

Fln protein: LLNRILVLPSPKFDYQYEHSLDIQHMKDCLGSNAIMTFEEFYNxxxxxxxIDRLICYLASPPCYMDDDHVRKFKGLGWSIGKTEVAWPEIPSLKAILHIRIQKKS*

Protein Length: 107

Fln nts: CGCTGCTAAACCGAATTCTGGTTCTCCCCAGCCCAAAATTTGACTATCAGTATGAACATTCTCTGGACATTCAGCACATGAAGGACTGTCTAGGGAGCAACGCTATAATGACATTCGAGGAGTTTTATAATxxxxxxxxxxxxxxxxxxxxxATCGATAGGTTGATCTGCTACTTGGCCTCACCACCTTGTTACATGGATGATGATCATGTGAGAAAGTTTAAAGGACTAGGATGGTCTATTGGCAAAACAGAGGTCGCTTGGCCTGAGATTCCAAGCTTAAAAGCTATCCTTCACATCCGCATTCAGAAGAAATCGTGAAAAGATTTTCATGCAATGATGAAGTAATTGGAATTGGTGATCTATTTTTGCAGACGTTGAAG

Fln Alignment:

biogeco2_mira_c15075___LLNRILVLPSPKFDYQYEHSLDIQHMKDCLGSNAIMTFEEFYNKxxxxxGIDRLICYLASP-PCYMDDDHVRKFKGLGWSIGKTEVAWPE
F6HXK5__________________LLNRILVIPSSKFDYQYNRVLDIEHINNCLGRKVVVTFEEFTESxxxxxHIDRVICYFSLPLPCYVDDDHVKKLKSLGISMGKLEPAWAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain