SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17255

Length: 548 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17255
ATTGGTGGCATTCTGAGAAATGTTGCTGCCATTGGGAAATCGAATACGGGATTCTAATCCAATCCCGGCTGTACCAATGCTCTCTTCTCCCTGCAATCTCCTCACAACAACCAGATTCAGTTCCCATCACGTCGTGCAACACCGATGGCTCGGGCATCCCATTCGTCTCAGACACTCAAGACATTGTTGTTTCACGAAGTATTCCTCGGCTTGCTTCGGAGGACCCCGAGCCGGACTGGAGCAAATTGCCCACAATCAGGTACTGGTGTCTGCAACCGCTACCTGTTTAATCGGACAGCTTTCGAAGCCCCTAGCGTCGGCTCTGCTAGGTAAGGGTTTCAACTGGAGGTTAGCTCTTAAATCTGGTGGCATGCCTTCAACCCATTCAGCGAGCATTGTAGCCTCTGCCACTGCTATTGGACTGGAAAGGGGTTTCTCAGATTCCTTGTTCGGGTTGACAGTTGTTGTCGCAGGGATTGTCATGTATGATGCTCAGGGGGTTAGAAGGTCTGTTGGTAAGCAGGCTGAAGTGATCAACATGATGATAG

Ace file of the UniGene biog2_v2.0_unigene17255 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2391	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF212 domain containing protein	-	-	3.0e-34	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acid phosphatase/vanadium-dependent haloperoxidase-related	IPR003832	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT29

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 176 - 328

Fln protein: MLLPLGNRIRDSNPIPAVPMLSSPCNLLTTTRFSSHHVVQHRWLGHPIRLRHSRHCCFTKYSSACFGGPRAGLEQIAHNQVLVSATATCLIGQLSKPLASALLGKGFNWRLALKSGGMPSTHSASIVASATAIGLERGFSDSLFGLTVVVAGIVMYDAQGVRRSVGKQAEVINMMI

Protein Length: 177

Fln nts: ATTGGTGGCATTCTGAGAA_-_ATGTTGCTGCCATTGGGAAATCGAATACGGGATTCTAATCCAATCCCGGCTGTACCAATGCTCTCTTCTCCCTGCAATCTCCTCACAACAACCAGATTCAGTTCCCATCACGTCGTGCAACACCGATGGCTCGGGCATCCCATTCGTCTCAGACACTCAAGACATTGTTGTTTCACGAAGTATTCCTCGGCTTGCTTCGGAGGACCCCGAGCCGGACTGGAGCAAATTGCCCACAATCAGGTACTGGTGTCTGCAACCGCTACCTGTTTAATCGGACAGCTTTCGAAGCCCCTAGCGTCGGCTCTGCTAGGTAAGGGTTTCAACTGGAGGTTAGCTCTTAAATCTGGTGGCATGCCTTCAACCCATTCAGCGAGCATTGTAGCCTCTGCCACTGCTATTGGACTGGAAAGGGGTTTCTCAGATTCCTTGTTCGGGTTGACAGTTGTTGTCGCAGGGATTGTCATGTATGATGCTCAGGGGGTTAGAAGGTCTGTTGGTAAGCAGGCTGAAGTGATCAACATGATGATAG

Fln Alignment:

biogeco2_mira_c15063___MLLPLGNRIRDSNPIPAVPMLSSPCNLLTTTRFSSHHVVQHRWLGHPIRLRHSRHCCFTKYSSACFGGPRAGLEQIAHNQVLVSATATCLIGQLSKPLASALLGKGFNWRLALKSGGMPSTHSASIVASATAIGLERGFSDSLFGLTVVVAGIVMYDAQGVRRSVGKQAEVINMMI
A9NT29__________________MLLLLGSGIGDSNPIPAVPMLSSPCNLLTTPRCSTHHVVQHQWLGHPIRLRHSKHYYSTKHSSACFGGPRAGLEQIAHNQVLVSATAACLIGQLSKPLASALLGKGFKWRLALKSGGMPSTHSASIVASATAIGLERGFSDSLFGLSVVVAGIVMYDAQGVRRAVGKQAEVINMMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain