SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17240

Length: 451 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17240
TCTCTCTCCTCTCTCTCTCTCTCTATATATATATCAAACTTTCTGCAATGACCTTGATGCTTGTATGTGCAGCCAACAGAAGGGATGCTACAAATCTGTGAAGAGAGCGGAACAGACATAGTACAGGCTCTCAGGAAGTCAAAACTGAGGCAAAGAAGGGATTCTTCTCAGTTTGTCATGGCCTCAAATGTCGATCAGGCAGTGGGTAGAGTGATTGGTCTCTTTGCGTAGTATCAGCAATAAACGGTGACGCAGAAAGTGCAATGGTTGCATCATGGGTTAGCCAAGCTAGTTTTGTACCACCTGGAATCACATTAGCAGTTGCAAAAGATAGAGCGGTGGAAAGTTTAATTTTGCCTGGAAGCAAGTTTATACTTAATGTACTTGGGGAGGGGAAGAGTTCTGCCATCAATGAAACAACTTTGAAGCCATTTAAACCGGGAGAACCCCG

Ace file of the UniGene biog2_v2.0_unigene17240 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28210	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	flavin reductase-like protein [Anabaena variabilis ATCC 29413] gb\|ABA21425.1\| Flavin reductase-like, FMN-binding protein [Anabaena variabilis ATCC 29413]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	flavin reductase- fmn-binding protein	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Flavin reductase-like, FMN-binding	IPR002563	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	Virulence factor, secretion apparatus	IPR008514	-	-
Sma3	FMN-binding split barrel	IPR012349	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A962

Fln msg: Distance to subject end: 66 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 80 - 158

Fln protein: SDWSLCVVSAINGDAESAMVASWVSQASFVPPGITLAVAKDRAVESLILPGSKFILNVLGEGKSSAINETTLKPFKPGEP

Protein Length: 81

Fln nts: TCTCTCTCCTCTCTCTCTCTCTCTATATATATATCAAACTTTCTGCAATGACCTTGATGCTTGTATGTGCAGCCAACAGAAGGGATGCTACAAATCTGTGAAGAGAGCGGAACAGACATAGTACAGGCTCTCAGGAAGTCAAAACTGAGGCAAAGAAGGGATTCTTCTCAGTTTGTCATGGCCTCAAATGTCGATCAGGCAGTGGGTAGAGTGATTGGTCTCTTTGCGTAGTATCAGCAATAAACGGTGACGCAGAAAGTGCAATGGTTGCATCATGGGTTAGCCAAGCTAGTTTTGTACCACCTGGAATCACATTAGCAGTTGCAAAAGATAGAGCGGTGGAAAGTTTAATTTTGCCTGGAAGCAAGTTTATACTTAATGTACTTGGGGAGGGGAAGAGTTCTGCCATCAATGAAACAACTTTGAAGCCATTTAAACCGGGAGAACCCCG

Fln Alignment:

biogeco2_mira_c15044___SLCVVSAINGDAESAMVASWVSQASFVPPGITLAVAKDRAVESLILPGSKFILNVLGEGKSSAINETTLKPFKPGEP
D5A962__________________SLCVVSAMNGDVESAMVASWVSQASFVPPGITLAVAKDRAVESLTLPGSKFILNVLGDGKSSAIMKQLLKPFKPGEP

SSRs (tot: 1)

Start position	End position	Sequence	Length
428	443	AG AG AG AG AG AG AG AG	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain