SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17182

Length: 308 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17182
GAACAAAGATTATCCTCTAAAGAGCAACAAAAGTGGGTCACAAAGATGTTGGGTTATGACGGGGAAATCATCTACAAAAAAGGGAAGCAAAATGTGCTAGCAGATGCACTCTCAAGAAAAGATGAGGATGTGGAAGCATTGTTGTGCGCCATTTCTATTATCCAACCAGATTGAATAAACGAAGCAAGGGAGGAATGGAAGAATGATGAAGAAGTGTGGGCACTTATTCAAAAGCTACAACAAGATTCCAGTACGTCTGATACATTTAGCTGGCAAAATGATTCGTTATGTTACAAAGATCGCTTATA

Ace file of the UniGene biog2_v2.0_unigene17182 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24652	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO	-	-	57%
FL-Next	tr=Pol polyprotein; Boechera divaricarpa.	-	-	41%
Blast2go	rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	70%
Blast2go	binding	GO:0005488	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B6REK2

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 102 - 450

Fln protein: EQRLSSKEQQKWVTKMLGYDGEIIYKKGKQNVLADALSRKDEDVEALLCAISIIQPD*INEAREEWKNDEEVWALIQKLQQDSSTSDTFSWQNDSLCYKDRL

Protein Length: 103

Fln nts: GAACAAAGATTATCCTCTAAAGAGCAACAAAAGTGGGTCACAAAGATGTTGGGTTATGACGGGGAAATCATCTACAAAAAAGGGAAGCAAAATGTGCTAGCAGATGCACTCTCAAGAAAAGATGAGGATGTGGAAGCATTGTTGTGCGCCATTTCTATTATCCAACCAGATTGAATAAACGAAGCAAGGGAGGAATGGAAGAATGATGAAGAAGTGTGGGCACTTATTCAAAAGCTACAACAAGATTCCAGTACGTCTGATACATTTAGCTGGCAAAATGATTCGTTATGTTACAAAGATCGCTTATA

Fln Alignment:

biogeco2_mira_c14973___EQRLSSKEQQKWVTKMLGYDGEIIYKKGKQNVLADALSRKDEDVEALLCAISIIQPD*INEAREEWKNDEEVWALIQKLQQDSSTSDTFSWQNDSLCYKDRL
B6REK2__________________EQRLNTPVQQKMLPRLLEFDYEIQYRQGKENVAVDALSRVD-GAKVLHMAMSMLECDLILNIQKAYETDAEVMAIIEKLKKDSVFIKNYSWMQDILRRKSKL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
56	33		66		0.997452
57		33		66	0.997476
80		33		66	0.997452
89	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain