SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17131

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17131
GCCAATACTTCATGCAAATTTTCCACTCTCAGAACTCCTTACAGACGCCGAAGAAGTGGATTAAATGGGCGATTGGCTTGCAGGGGAGCGTCAGAACCCATAATAGCTGAAGAAAGAGAAGAAAAGACAGGGAATTTGGATAACAGAGTCCGGCAAGTTTTCCATTTCGGATTCCCAGCTCAGCTCTCGCGGATTCGAGCTTCATTACTTCTTGGACAACTTGGATTTGGATGAATTGAATGCCCTGTTTGTCA

Ace file of the UniGene biog2_v2.0_unigene17131 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3112	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases	-	-	2.0e-22	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	N-acetyltransferase activity	GO:0008080	Molecular Function	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	GNAT domain	IPR000182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPF8

Fln msg: Overlapping hits, possible frame ERROR between 126 and 116, Distance to subject end: 120 aas, your sequence is shorter than subject: 85 - 248

Fln protein: ANTSCKFSTLRTPYRRRRSGLNGRLACRGASEPIIAEExxxxxQGIWITESGKFSISDSQLSSRGFELHYFLDNLDLDELNALFV

Protein Length: 86

Fln nts: GCCAATACTTCATGCAAATTTTCCACTCTCAGAACTCCTTACAGACGCCGAAGAAGTGGATTAAATGGGCGATTGGCTTGCAGGGGAGCGTCAGAACCCATAATAGCTGAAGAAxxxxxxxxxxxxxxxCAGGGAATTTGGATAACAGAGTCCGGCAAGTTTTCCATTTCGGATTCCCAGCTCAGCTCTCGCGGATTCGAGCTTCATTACTTCTTGGACAACTTGGATTTGGATGAATTGAATGCCCTGTTTGTCA

Fln Alignment:

biogeco2_mira_c14905___ANTSCKFSTLRTPYRRRRSGLNGRLACRGASEPIIAEERxxxRQGIWITESGKFSISDSQLSSRGFELHY
A9NPF8__________________ANTSCKFSTVGTPYRRGRSRLNRQLACRGASEPIIAEETxxxDRGIWITESGKFSISDSQLSSRGFELHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain