SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17129

Length: 284 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17129
GTCAGGTTTCCAACNGGTTCNTAAATGCTAGAGTTAGGCTCTGGAAGCCGATGGTGGAAGAGATGTACCTGCAGGAAAGCAAGGATCATCTGAAATGGATATTACTCTAAAAAGAAAGGAAAGTGACTCCAGAGATAAACTGAGTGTCCTATGGGGAAATGAGAAAAAATATGAATAAGCATGGAAAGATGATGTTAGATGGAGGGTCAGATAGGCAATCTGCTTCTGAAGGCGGATGTTCCAAATTTGATCACGGTGGCAAGACACATCACAAACTGGTCAAG

Ace file of the UniGene biog2_v2.0_unigene17129 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene735	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative BEL1-like protein (Fragment) n=1 Tax=Gnetum gnemon RepID=Q7XA57_GNEGN	-	-	54%
FL-Next	sp=BEL1-like homeodomain protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	bel1-like homeodomain 4	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	65%
Blast2go	metabolic process	GO:0008152	Biological Process	65%
Blast2go	DNA binding	GO:0003677	Molecular Function	65%
Blast2go	plastid	GO:0009536	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	POX	IPR006563	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIW1

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 94 - 482

Fln protein: QVSNGFLNARVRLWKPMVEEMYLQESKDHLKWILL*KERKVTPEIN*VSYGEMRKNMNKHGKMMLDGGSDRQSASEGGCSKFDHGGKTHHKLVK

Protein Length: 95

Fln nts: GTCAGGTTTCCAACgGGTTCtTAAATGCTAGAGTTAGGCTCTGGAAGCCGATGGTGGAAGAGATGTACCTGCAGGAAAGCAAGGATCATCTGAAATGGATATTACTCTAAAAAGAAAGGAAAGTGACTCCAGAGATAAACTGAGTGTCCTATGGGGAAATGAGAAAAAATATGAATAAGCATGGAAAGATGATGTTAGATGGAGGGTCAGATAGGCAATCTGCTTCTGAAGGCGGATGTTCCAAATTTGATCACGGTGGCAAGACACATCACAAACTGGTCAAG

Fln Alignment:

biogeco2_mira_c14903___QVSNGFLNARVRLWKPMVEEMYLQESKDHLKWILL*KERKVTPEIN*VSYGEMRKNMNKHGKMMLDGGSDRQSASEGGCSKF
Q9SIW1__________________QVSNWFINARVRLWKPMVEEMYKEEFTDALQENDPNQSSENTPEITEIQELQTESSSNNGHVPGVASSSMRQNTVAHGGDRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain