SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17117

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17117
CTACCTGTATTATTTAACTCAATTGTTTTCGGCCCATCACTTCCCCAAAGCTACATCGTTCGCGTTACAAACCATAAACCCCTTGCCATTAATACCTTTTCAAACCATAACTATAAACACATGATTGGTTGAGTAGAGGAATGAGAGTTTTCTGCACCAGCGTAGCCCGAATTTGCTGATACAAACGCCCAGACAATAATGGAGAACGAGGAAGGCACAACCTCTTCCCCCGGGCCAGCGAATAACTCCTCTCAAGCATTTTGGACGCAAGAAGACACCGCAGACGTATCCGGGGCTGCTACGGATGTCGAGCTTCTAAAACGGGCCTGGAGAAATGAGAAAGCTGCTCCAGAAATTCTTACCTTCCAGAATGACCTGGTTCAGCGCTCCAGAGAGCAAATACAATTGCTGGAAGAGGCTATCGAAGCCTTTGCCGAGAGTGGAACTGACGACCTTATGCTATCACTGTACCGCATGGACTTGGACCGCACACTA

Ace file of the UniGene biog2_v2.0_unigene17117 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1607	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GINS complex subunit 4 [Arabidopsis thaliana] gb\|AAQ62407.1\| At5g49010 [Arabidopsis thaliana] dbj\|BAD94796.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED95756.1\| GINS complex subunit 4 [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	69%
Blast2go	dna replication complex gins protein sld5-like	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	77%
Blast2go	GINS complex	GO:0000811	Cellular Component	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	GINS complex, subunit Sld5	IPR008591	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F2EH43

Fln msg: Distance to subject end: 135 aas, your sequence is shorter than subject: 99 - 217

Fln protein: MENEEGTTSSPGPANNSSQAFWTQEDTADVSGAATDVELLKRAWRNEKAAPEILTFQNDLVQRSREQIQLLEEAIEAFAESGTDDLMLSLYRMDLDRTL

Protein Length: 100

Fln nts: CTACCTGTATTATTTAACTCAATTGTTTTCGGCCCATCACTTCCCCAAAGCTACATCGTTCGCGTTACAAACCATAAACCCCTTGCCATTAATACCTTTTCAAACCATAACTATAAACACATGATTGGTTGAGTAGAGGAATGAGAGTTTTCTGCACCAGCGTAGCCCGAATTTGCTGATACAAACGCCCAGACAATA_-_ATGGAGAACGAGGAAGGCACAACCTCTTCCCCCGGGCCAGCGAATAACTCCTCTCAAGCATTTTGGACGCAAGAAGACACCGCAGACGTATCCGGGGCTGCTACGGATGTCGAGCTTCTAAAACGGGCCTGGAGAAATGAGAAAGCTGCTCCAGAAATTCTTACCTTCCAGAATGACCTGGTTCAGCGCTCCAGAGAGCAAATACAATTGCTGGAAGAGGCTATCGAAGCCTTTGCCGAGAGTGGAACTGACGACCTTATGCTATCACTGTACCGCATGGACTTGGACCGCACACTA

Fln Alignment:

biogeco2_mira_c14887___WTQEDTADVSGAAT-DVELLKRAWRNEKAAPEILTFQNDLVQRSREQIQLLEEAIEAFAESGTDDLMLSLYRMDLDRTL
F2EH43__________________WEDEDSAAASAAATTDVELLKRAWRNEKAAPEILHFDSALVSRAREQIQLLEETLDDFTDNGVDDLVVSLYQMDLDRTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain