SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene17086

Length: 463 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene17086
ATGGGATTGACATATCAGAAATGAGGCTGAAGTTTTCACTGGAGGCAGCACCCTGCCCAAAGACCCCATGGCATATTTGGCATTTGGACTCCAATAATCAACACTATAGGGAATGTATTGAAAATGCAGATTCATTTCAGAAAGTTGTTTGCAGAAACAAGTTTATGAGAAAAAGTTCTGTCATGTCAGCTATTACCAACCGAATTCGGAGAGATTTGATACATAATCCTTTCCACTTGCTTTTTGGAGTAGACGTGCTTGGTATGACAAGCTCAACTTTAGCAACTCTGAGTAAAGGATTTGCTGAACTTTCCACTGATGGACAGTTTCTTCAGCTACGCACAAAGCAGGGGTCAACTAGAAGAATTACTGGAGTTGGTGATGGTATTTTACAAGGCACTGAAGCTTTAGCACAAGGTGTGGCATTTGGTGTCTCTGGAGTGCTGACCAAGCCCTGGGCAAG

Ace file of the UniGene biog2_v2.0_unigene17086 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37354	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar protein sorting 13C protein-like [Oryza sativa Japonica Group] dbj\|BAD19586.1\| vacuolar protein sorting 13C protein-like [Oryza sativa Japonica Group]	-	-	4.99997e-41	41%
FL-Next	tr=Putative uncharacterized protein OSJNBa0027P10.9; Oryza sativa (Rice).	-	-	0.0	62%
Blast2go	pleckstrin homology domain-containing protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9AY34

Fln msg: Distance to subject end: 408 aas, your sequence is shorter than subject: 153 - 660

Fln protein: GIDISEMRLKFSLEAAPCPKTPWHIWHLDSNNQHYRECIENADSFQKVVCRNKFMRKSSVMSAITNRIRRDLIHNPFHLLFGVDVLGMTSSTLATLSKGFAELSTDGQFLQLRTKQGSTRRITGVGDGILQGTEALAQGVAFGVSGVLTKPWA

Protein Length: 154

Fln nts: ATGGGATTGACATATCAGAAATGAGGCTGAAGTTTTCACTGGAGGCAGCACCCTGCCCAAAGACCCCATGGCATATTTGGCATTTGGACTCCAATAATCAACACTATAGGGAATGTATTGAAAATGCAGATTCATTTCAGAAAGTTGTTTGCAGAAACAAGTTTATGAGAAAAAGTTCTGTCATGTCAGCTATTACCAACCGAATTCGGAGAGATTTGATACATAATCCTTTCCACTTGCTTTTTGGAGTAGACGTGCTTGGTATGACAAGCTCAACTTTAGCAACTCTGAGTAAAGGATTTGCTGAACTTTCCACTGATGGACAGTTTCTTCAGCTACGCACAAAGCAGGGGTCAACTAGAAGAATTACTGGAGTTGGTGATGGTATTTTACAAGGCACTGAAGCTTTAGCACAAGGTGTGGCATTTGGTGTCTCTGGAGTGCTGACCAAGCCCTGGGCAAG

Fln Alignment:

biogeco2_mira_c14846___IDISEMRLKFSLEAAPC--PKTPWHIWHLDSNNQHYRECIENADSFQ----KVVCRNKFMRKSSVMSAITNRIRRDLIHNPFHLLFGVDVLGMTSSTLATLSKGFAELSTDGQFLQLRTKQGSTRRITGVGDGILQGTEALAQGVAFGVSGVLTKP
Q9AY34__________________VDISEIRLKISLETAPTQRPRGVLGIW------SPVLSAVGNALKIQVHLRKVMHRSRYMRKSSIIPAITNRIKRDLIHNPLHLIFSVDFLGVTKSTLSSLSKGFAELSTDGQFLQLRSKQVWSRRITGVGDGLVQGTEAFAQGLAFGVSGVLRKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain