SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16981

Length: 348 nt

UniGene Fasta

>biog2_v2.0_unigene16981
GTCAGAAAGAAGCCCTGGACTTTTATGGTGGTTGACAGTTCATTTCTCCACAATCGACGGACTGCAACAGAAGCTGCCGTGTTTAGATAAATAAATAGCCCATCCGGAGTCCAAGATACAAGGCCTGTAACAGAATCTGCTGTTGTTAGAATCTCCTAGACATCAATCCCAGGACGCTGAATTACTCTGTTTTGATCAATCAATGGACGGGCCTCCCTCTGGGTACAGACCAAATGTTGGAGTTTGCCTATTGAATTCTATGAATGAGGTATTTGTTGCTTCAAGATTGAACCTTCCAGGCGCATGGCAAATGCCGCAGGGTGGAGTTAATGAAGACGAAGAACCAAA

Ace file of the UniGene biog2_v2.0_unigene16981

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10134	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	nudix hydrolase 25 [Arabidopsis thaliana] ref\|NP_001185114.1\| nudix hydrolase 25 [Arabidopsis thaliana] sp\|Q9C6Z2.1\|NUD25_ARATH RecName: Full=Nudix hydrolase 25; Short=AtNUDT25; AltName: Full=Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) gb\|AAG50852.1	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	nudix hydrolase 25	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical).	EC:3.6.1.17	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	81%
Blast2go	Pyrimidine metabolism	00240		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	diadenosine tetraphosphate catabolic process	GO:0015967	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	GO:0004081	Molecular Function	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NP51

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 48 - 167

Fln protein: MDGPPSGYRPNVGVCLLNSMNEVFVASRLNLPGAWQMPQGGVNEDEEP

Protein Length: 49

Fln nts: GTCAGAAAGAAGCCCTGGACTTTTATGGTGGTTGACAGTTCATTTCTCCACAATCGACGGACTGCAACAGAAGCTGCCGTGTTTAGATAAATAAATAGCCCATCCGGAGTCCAAGATACAAGGCCTGTAACAGAATCTGCTGTTGTTAGAATCTCCTAGACATCAATCCCAGGACGCTGAATTACTCTGTTTTGATCAATCA_-_ATGGACGGGCCTCCCTCTGGGTACAGACCAAATGTTGGAGTTTGCCTATTGAATTCTATGAATGAGGTATTTGTTGCTTCAAGATTGAACCTTCCAGGCGCATGGCAAATGCCGCAGGGTGGAGTTAATGAAGACGAAGAACCAAA

Fln Alignment:

biogeco2_mira_c14715___MDGPPSGYRPNVGVCLLNSMNEVFVASRLNLPGAWQMPQGGVNEDEEP
A9NP51__________________MDDPPPGYRSNVGVCLINSMNQVFVASRLDVPGAWQMPQGGVDEREDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain