SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16963

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16963
TCCGACACTGCTTCGGTACCCGAACTCCAGAAACCACTTCTCTCGAACAGCATCCGAGACGCACCGGAATCCGACCAGGCCGATTTTGATCCCACGCTCGCGCGCCTGCAAACCGTTCTGGTGTTGCTGGGACTCGATCACTCGGCCGTGCTCAATACGTTGTTGGCTTGGCTTGCCTTCGTGGGGCTGGGAGCAGTGGTGCCTGCGGTCACCCTGTGGGCAACCAACTGCACGGACTGTCATAAAGTTCAGGTGCTTAAGTTTGAAGTGATGANACAGATCTCCGATTCCGGTTTAGCTGCAGTTTCTATGCTGTGCATGGCTTACAATATTAGGAAATATGGGCTCCGCAGGTTGCTTTTCCTGGACCAAACTGGCCATCCTCAAGTGCGTTTTCGCCTCGACTTCCCGAGTCAGCTCCAGGAAAG

Ace file of the UniGene biog2_v2.0_unigene16963 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene753	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3537 multi-domain protein	-	-	37%
FL-Next	tr=Predicted protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	36%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	64%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7KVL4

Fln msg: Distance to subject end: 295 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 142 - 452

Fln protein: SDTASVPELQKPLLSNSIRDAPESDQADFDPTLARLQTVLVLLGLDHSAVLNTLLAWLAFVGLGAVVPAVTLWATNCTDCHKVQVLKFEVMIQISDSGLAAVSMLCMAYNIRKYGLRRLLFLDQTGHPQVRFRLDFPSQLQE

Protein Length: 143

Fln nts: TCCGACACTGCTTCGGTACCCGAACTCCAGAAACCACTTCTCTCGAACAGCATCCGAGACGCACCGGAATCCGACCAGGCCGATTTTGATCCCACGCTCGCGCGCCTGCAAACCGTTCTGGTGTTGCTGGGACTCGATCACTCGGCCGTGCTCAATACGTTGTTGGCTTGGCTTGCCTTCGTGGGGCTGGGAGCAGTGGTGCCTGCGGTCACCCTGTGGGCAACCAACTGCACGGACTGTCATAAAGTTCAGGTGCTTAAGTTTGAAGTGATGAtACAGATCTCCGATTCCGGTTTAGCTGCAGTTTCTATGCTGTGCATGGCTTACAATATTAGGAAATATGGGCTCCGCAGGTTGCTTTTCCTGGACCAAACTGGCCATCCTCAAGTGCGTTTTCGCCTCGACTTCCCGAGTCAGCTCCAGGAAAG

Fln Alignment:

biogeco2_mira_c14690___PELQKPLLSNSIRD-----APESDQA-------DFDPTLARLQTVLVLLGLDHSAVLNTLLAWLAFVGLGAVVPAVTLWATNCTDCHKVQVLKFEVMIQISDSGLAAVSMLCMAYNIRKYGLRRLLFLDQTGHPQVRFRLDFPSQL
D7KVL4__________________PAVETPLLINSNQDHRERPSPEIDGGGGEGVDDDLDRTLERLETFLTLLGFNQSSTRSLVLSWIVFLAIGLVLPVTVLELGHCLGCERYQYKSFELNIVVSQALLAGVSLLCVSHNLRKHGIRKFLFVDQLSGRMGRLKAQYIKQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain