SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16940

Length: 498 nt

UniGene Fasta

>biog2_v2.0_unigene16940
ACTACTCCCCATTCTCTTGGTGTACTTGGGAATTCATATCCACCATCTGCTGGTTCCTTTACATCAGACCTGATGAGCCTAATGAAACCACTTTTGGATTTCCTGTCTCAGATTGATTCTCCTTTCTTCGTAAATGTTTATCCATTCTTTGCATACAAGGCTAATCCAAGCCAGATATCCCTGGATTATGTCCTATTCCAACCAAATGCAGGTGTTGTTGATCCCAACAATAATATTAGCTATAACAACATGTTATATGCACAGGTTGATGCTGTTTATTCTGCACTGTCTGCACTGGGGTATCCTAATCTAGAAGTCAGAGTCTCTGAAACTGGATGGCCTTCAATGGGTGATGCTGATGAAGCAGGTGCAACTCTTCAGAATGCCCAGACTTATAATGGGAATCTACTTAAACTGCTGGCTCAGAACCAAGGGACTCCTTTGAGACCCAAAGTTGTTTTGCAGGCTTACCTATTTGCATTATTCAATGAGGACATG

Ace file of the UniGene biog2_v2.0_unigene16940

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25842	1/2
SustainPine v2.0	sp_v2.0_unigene60544	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	glucan endo-1,3-beta-glucosidase 14 [Arabidopsis thaliana] sp\|Q9ZQG9.2\|E1314_ARATH RecName: Full=Glucan endo-1,3-beta-glucosidase 14; AltName: Full=(1->3)-beta-glucan endohydrolase 14; Short=(1->3)-beta-glucanase 14; AltName: Full=Beta-1,3-endoglucanase 1	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	glycosyl hydrolase	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW3

Fln msg: Distance to subject end: 73 aas, your sequence is shorter than subject: 166 - 405

Fln protein: TTPHSLGVLGNSYPPSAGSFTSDLMSLMKPLLDFLSQIDSPFFVNVYPFFAYKANPSQISLDYVLFQPNAGVVDPNNNISYNNMLYAQVDAVYSALSALGYPNLEVRVSETGWPSMGDADEAGATLQNAQTYNGNLLKLLAQNQGTPLRPKVVLQAYLFALFNEDM

Protein Length: 167

Fln nts: ACTACTCCCCATTCTCTTGGTGTACTTGGGAATTCATATCCACCATCTGCTGGTTCCTTTACATCAGACCTGATGAGCCTAATGAAACCACTTTTGGATTTCCTGTCTCAGATTGATTCTCCTTTCTTCGTAAATGTTTATCCATTCTTTGCATACAAGGCTAATCCAAGCCAGATATCCCTGGATTATGTCCTATTCCAACCAAATGCAGGTGTTGTTGATCCCAACAATAATATTAGCTATAACAACATGTTATATGCACAGGTTGATGCTGTTTATTCTGCACTGTCTGCACTGGGGTATCCTAATCTAGAAGTCAGAGTCTCTGAAACTGGATGGCCTTCAATGGGTGATGCTGATGAAGCAGGTGCAACTCTTCAGAATGCCCAGACTTATAATGGGAATCTACTTAAACTGCTGGCTCAGAACCAAGGGACTCCTTTGAGACCCAAAGTTGTTTTGCAGGCTTACCTATTTGCATTATTCAATGAGGACATG

Fln Alignment:

biogeco2_mira_c14661___TTPHSLGVLGNSYPPSAGSFTSDLMSLMKPLLDFLSQIDSPFFVNVYPFFAYKANPSQISLDYVLFQPNAGVVDPNNNISYNNMLYAQVDAVYSALSALGYPNLEVRVSETGWPSMGDADEAGATLQNAQTYNGNLLKLLAQNQGTPLRPKVVLQAYLFALFNEDM
B8LRW3__________________TTPHSLAVLGNSYPPSAGSFVSDLNSLMKPLLDFLSQIGSPFFINIYPYFAYKSNPSQVSLDYVLFQPNAGVIDPNNNIRYNNMLYAQVDAVYSALSALGYANLEVTVSETGWPSMGDASEAGATLQNAQTYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain