SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16932

Length: 553 nt

UniGene Fasta

>biog2_v2.0_unigene16932
TTGACTTCGCCAATGCATGTGTCGTCGTTCACCTGGTTGGCGCGTATCAGGTATTCTCTCAACCGCTCTTTGCCTTCATCGAAGAATGGAGCCATAAGAAGTGGCCAAGAAGTCAATTTATCCACAAGAATTACATTGTTAACATCCCTATGTTGGGACTGTACAAGGCCAACCTGTTCAGGTTGGTGTGGAGGACATGCTTTGTTATTTCAACTACCCTCATTTCCATGCTTCTGCCCTTTTTCAACGATGTGGTAGGGATTCTGGGGGCAGTAGGATTTTGGCCTCTGACAGTGTATTTCCCCGTGGAAATGTATATAGTCCACAGGAAGATCCCGCGTTACTCGAGCAAGTGGATTCTTCTGCAAACTTTGAGCGTGGTCTGTTTCATTGTTTCATTGGCAGCTGCCATCGGATCCATCGAAGGCATCATCCAAGACTTGAAGTCGTACAAACCCTTCCATACCGCTTACTGATCGATCCATTGTATTTCTCAGTCAAATTCGGAACCATATCTCTGCACTTTTAGTGGCAACGAGAAAGCTTTGCTGCA

Ace file of the UniGene biog2_v2.0_unigene16932

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11766	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4M6_POPTR	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	amino acid permease	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: your sequence is shorter than subject: 158 - 492

Fln protein: DFANACVVVHLVGAYQVFSQPLFAFIEEWSHKKWPRSQFIHKNYIVNIPMLGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIVHRKIPRYSSKWILLQTLSVVCFIVSLAAAIGSIEGIIQDLKSYKPFHTAY*

Protein Length: 159

Fln nts: TTGACTTCGCCAATGCATGTGTCGTCGTTCACCTGGTTGGCGCGTATCAGGTATTCTCTCAACCGCTCTTTGCCTTCATCGAAGAATGGAGCCATAAGAAGTGGCCAAGAAGTCAATTTATCCACAAGAATTACATTGTTAACATCCCTATGTTGGGACTGTACAAGGCCAACCTGTTCAGGTTGGTGTGGAGGACATGCTTTGTTATTTCAACTACCCTCATTTCCATGCTTCTGCCCTTTTTCAACGATGTGGTAGGGATTCTGGGGGCAGTAGGATTTTGGCCTCTGACAGTGTATTTCCCCGTGGAAATGTATATAGTCCACAGGAAGATCCCGCGTTACTCGAGCAAGTGGATTCTTCTGCAAACTTTGAGCGTGGTCTGTTTCATTGTTTCATTGGCAGCTGCCATCGGATCCATCGAAGGCATCATCCAAGACTTGAAGTCGTACAAACCCTTCCATACCGCTTACTGA___TCGATCCATTGTATTTCTCAGTCAAATTCGGAACCATATCTCTGCACTTTTAGTGGCAACGAGAAAGCTTTGCTGCA

Fln Alignment:

biogeco2_mira_c14653___DFANACVVVHLVGAYQVFSQPLFAFIEEWSHKKWPRSQFIHKNYIVNIPMLGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIVHRKIPRYSSKWILLQTLSVVCFIVSLAAAIGSIEGIIQDLKSYKPFHTAY
B8LQS2__________________DFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSIEGIIQDLKSYKPFRTTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain