SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16914

Length: 435 nt

UniGene Fasta

>biog2_v2.0_unigene16914
TTCTATTTACACCCTTCCAAATCAACCTAACTGTATGGTGCAGTTTAATTTTGGACCAGAATTTGATTGCTTTCCTGAGGACTTTGGCAATCGACCCATTCCCAAGGCCATGTGCGAGGCTTCTTATTGTGGAATTGACGGGCAAGCAGTCCACCATGGAGAAACTCTTGTTGAAAATGGTCAATCTTCAGAAAAGAAAGCTTGATATTTTTGGTATATTTTTTCATTTTAGAACTGAGACAGTATACATTTACTGTTGGTAGTGCTTACCTTTGCATAAAATCTTGATCTGTGGGATGCAGTGGTGGCAATTCTTTTATGACATTCTAGGTTTCTTAATAATTAATAGGAAAGAAATTTCTATTATGTTGTATGAAAGCTTGCAAATGCCATTCAGCTGAATGTGGATAATCACGCAACTGATGTCCTTGCTAT

Ace file of the UniGene biog2_v2.0_unigene16914

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4891	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAUCO n=1 Tax=Pinus radiata RepID=B3V288_PINRA	-	-	2.00386e-43	88%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	87%
Blast2go	set1 ash2 histone methyltransferase complex subunit ash2-like	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	78%
Blast2go	simple leaf morphogenesis	GO:0060776	Biological Process	78%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	78%
Blast2go	histone methylation	GO:0016571	Biological Process	78%
Blast2go	chromatin DNA binding	GO:0031490	Molecular Function	78%
Blast2go	Set1C/COMPASS complex	GO:0048188	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: your sequence is shorter than subject: 68 - 412

Fln protein: SIYTLPNQPNCMVQFNFGPEFDCFPEDFGNRPIPKAMCEASYCGIDGQAVHHGETLVENGQSSEKKA*

Protein Length: 69

Fln nts: TTCTATTTACACCCTTCCAAATCAACCTAACTGTATGGTGCAGTTTAATTTTGGACCAGAATTTGATTGCTTTCCTGAGGACTTTGGCAATCGACCCATTCCCAAGGCCATGTGCGAGGCTTCTTATTGTGGAATTGACGGGCAAGCAGTCCACCATGGAGAAACTCTTGTTGAAAATGGTCAATCTTCAGAAAAGAAAGCTTGA___TATTTTTGGTATATTTTTTCATTTTAGAACTGAGACAGTATACATTTACTGTTGGTAGTGCTTACCTTTGCATAAAATCTTGATCTGTGGGATGCAGTGGTGGCAATTCTTTTATGACATTCTAGGTTTCTTAATAATTAATAGGAAAGAAATTTCTATTATGTTGTATGAAAGCTTGCAAATGCCATTCAGCTGAATGTGGATAATCACGCAACTGATGTCCTTGCTAT

Fln Alignment:

biogeco2_mira_c14632___SIYTLPNQPNCMVQFNFGPEFDCFPEDFGNRPIPKAMCEASYCGIDGQAVHHGETLVENGQSSEKK
B3V288__________________SFYTLPNQPNCQVQFNFGPEFDCFPEDFGNRPLPKAMSEASYCGIDRQAVNHGELLVESGQSSEKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain