SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16885

Length: 327 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16885
AGGAGCCATGGCTATGGTTACGGAGCCAATTTTCGCGTCCGTGGCCAATACATTGGGCAAGTTCGATAATGTTAGCAAGGTACCGAAGGATCTCAAGGGACTGGAGATGGGGCAGTTGGAAATAAAGCATGGTTTGCTGCAATTAGCAGAATCACTGGGATTTCTTCACAATAATGCACGACTAATTCATCGTGCCATATCACCTGAGACAGTCTTTATCACTTCCAGTGGAGCATGGAAACTTGGTGGCTTTGGCTTTGCTATTTCTGCTGATCAGGTTTCAGGAGACACAAGTACATTTCAGGCTTTTCATTTCCCAGAATATGA

Ace file of the UniGene biog2_v2.0_unigene16885 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11186	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase-like protein with ARM repeat domain-containing protein [Arabidopsis thaliana] gb\|AEE30298.1\| protein kinase-like protein with ARM repeat domain-containing protein [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	75%
Blast2go	scy1-like protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MWK5

Fln msg: Distance to subject end: 691 aas, your sequence is shorter than subject: 108 - 931

Fln protein: GAMAMVTEPIFASVANTLGKFDNVSKVPKDLKGLEMGQLEIKHGLLQLAESLGFLHNNARLIHRAISPETVFITSSGAWKLGGFGFAISADQVSGDTSTFQAFHFPEY

Protein Length: 109

Fln nts: AGGAGCCATGGCTATGGTTACGGAGCCAATTTTCGCGTCCGTGGCCAATACATTGGGCAAGTTCGATAATGTTAGCAAGGTACCGAAGGATCTCAAGGGACTGGAGATGGGGCAGTTGGAAATAAAGCATGGTTTGCTGCAATTAGCAGAATCACTGGGATTTCTTCACAATAATGCACGACTAATTCATCGTGCCATATCACCTGAGACAGTCTTTATCACTTCCAGTGGAGCATGGAAACTTGGTGGCTTTGGCTTTGCTATTTCTGCTGATCAGGTTTCAGGAGACACAAGTACATTTCAGGCTTTTCATTTCCCAGAATATGA

Fln Alignment:

biogeco2_mira_c14599___AMAMVTEPIFASVANTLGKFDNVSKVPKDLKGLEMGQLEIKHGLLQLAESLGFLHNNARLIHRAISPETVFITSSGAWKLGGFGFAISADQVSGDTSTFQAFHFPEY
B9MWK5__________________AMAMVTEPLFASVANAIGNLENVGKVPKELKGMEMGLLEVKHGLLQIAESLDFLHNNAHLIHRAISPENILITSSGAWKLGGFGFAITTDQASGDLASSQAFHYAEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain