SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16874

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16874
GTAATGGAGGTTAAGCACAATATTCTGATGGGGAGGTATGAATTAGGGCGCCTGTTGGGGCAAGGGACGTTCGCCAAGGTCTACTACGCCAGAAGTCTGAAAACAGGCGAGAGCGTGGCCATCAAAGCCATGGACAAGGAAAAAATCCTCAAGGTCGGCATGATCGAGCAGATTAAACGGGAAATCTCGGTTATGAGACTGGTTCGGCATCCCAACATCGTTCGGCTCTACGAAGTCATGGCGAGCAAGTCCAAGATTTACTTCGTCATGGAGTATGTTAAGGGCGGTGAGCTCTTCAACAGGGTTGTTGAAAATGATATACTGGAAGAGGAGGAGGCGAAGAAGTATTTTCAAGAATTGATTAGCGCGGTGGATTTCTGCCACAGCCGGGGTGTGTACCACCGGGATT

Ace file of the UniGene biog2_v2.0_unigene16874 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17480	1/2
SustainPine v2.0	sp_v2.0_unigene30057	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	serine-threonine kinase	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg: Distance to subject end: 296 aas, your sequence is shorter than subject: 135 - 431

Fln protein: MEVKHNILMGRYELGRLLGQGTFAKVYYARSLKTGESVAIKAMDKEKILKVGMIEQIKREISVMRLVRHPNIVRLYEVMASKSKIYFVMEYVKGGELFNRVVENDILEEEEAKKYFQELISAVDFCHSRGVYHRD

Protein Length: 136

Fln nts: GTA_-_ATGGAGGTTAAGCACAATATTCTGATGGGGAGGTATGAATTAGGGCGCCTGTTGGGGCAAGGGACGTTCGCCAAGGTCTACTACGCCAGAAGTCTGAAAACAGGCGAGAGCGTGGCCATCAAAGCCATGGACAAGGAAAAAATCCTCAAGGTCGGCATGATCGAGCAGATTAAACGGGAAATCTCGGTTATGAGACTGGTTCGGCATCCCAACATCGTTCGGCTCTACGAAGTCATGGCGAGCAAGTCCAAGATTTACTTCGTCATGGAGTATGTTAAGGGCGGTGAGCTCTTCAACAGGGTTGTTGAAAATGATATACTGGAAGAGGAGGAGGCGAAGAAGTATTTTCAAGAATTGATTAGCGCGGTGGATTTCTGCCACAGCCGGGGTGTGTACCACCGGGATT

Fln Alignment:

biogeco2_mira_c14586___MEVKHNILMGRYELGRLLGQGTFAKVYYARSLKTGESVAIKAMDKEKILKVGMIEQIKREISVMRLVRHPNIVRLYEVMASKSKIYFVMEYVKGGELFNRVVENDILEEEEAKKYFQELISAVDFCHSRGVYHRD
D5A9K4__________________MEMKSNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKVMAKEKILKVGMIEQIKREVSVMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain