SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16861

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16861
AAGCTGAGGAAGAGATTGCCAATATGGATGACAAAATAGAGAGCTAGACAGGCAAAAGAACTTGCATCATTAGGCTATAAAAGTGAGGATGGCCGGGACTCTAATGGTCGTGACAGCTTGGTTAAGGCCATAGCAGGTATATCTGTGACAAGTACTAGTCAGTCCAGCAAGCCAAGTAAGGGTGTACAGCGGCGTGCAAAGAGAGCACAACAAGAGGCAGAGCGTGAACAAAGAATTCAAGAAGAACAGGACAACACAATCAGTAACCGTGTGCTTGAAAATCAGCAGTTGCAGCAGAAACTGCAGCCACTTGGGTTATCATTAAATGAAATCAAGGCAGATGGTCACTGCCTCTATCGGGCTATAGAGAATCAACTGTCACTACATCCAGGGCTTTCATGCAAGTTTTCATATCAGCAACTTCGAGAAATGGCTGCTGCATATATGCGAAGTCATGCAGAAGATTTCTTACCATTCTTTTTATCTGAGTCTGAGAATGATACAAAATCAGATGAGA

Ace file of the UniGene biog2_v2.0_unigene16861 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20634	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	OTU domain-containing protein 6B, putative n=1 Tax=Ricinus communis RepID=B9SLP0_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	62%
Blast2go	cysteine proteinases family protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HQ10

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 172 - 331

Fln protein: KLRKRLPIWMTK*RARQAKELASLGYKSEDGRDSNGRDSLVKAIAGISVTSTSQSSKPSKGVQRRAKRAQQEAEREQRIQEEQDNTISNRVLENQQLQQKLQPLGLSLNEIKADGHCLYRAIENQLSLHPGLSCKFSYQQLREMAAAYMRSHAEDFLPFFLSESENDTKSDE

Protein Length: 173

Fln nts: AAGCTGAGGAAGAGATTGCCAATATGGATGACAAAATAGAGAGCTAGACAGGCAAAAGAACTTGCATCATTAGGCTATAAAAGTGAGGATGGCCGGGACTCTAATGGTCGTGACAGCTTGGTTAAGGCCATAGCAGGTATATCTGTGACAAGTACTAGTCAGTCCAGCAAGCCAAGTAAGGGTGTACAGCGGCGTGCAAAGAGAGCACAACAAGAGGCAGAGCGTGAACAAAGAATTCAAGAAGAACAGGACAACACAATCAGTAACCGTGTGCTTGAAAATCAGCAGTTGCAGCAGAAACTGCAGCCACTTGGGTTATCATTAAATGAAATCAAGGCAGATGGTCACTGCCTCTATCGGGCTATAGAGAATCAACTGTCACTACATCCAGGGCTTTCATGCAAGTTTTCATATCAGCAACTTCGAGAAATGGCTGCTGCATATATGCGAAGTCATGCAGAAGATTTCTTACCATTCTTTTTATCTGAGTCTGAGAATGATACAAAATCAGATGAGA

Fln Alignment:

biogeco2_mira_c14571___RARQAKELASLGYKSEDGRDSNGRDSLVKAIAGIXXXXXXXXXXXXKGVXXXXXXXXXXXXXXXXXXXXQDNTISNRVLENXXXXXXXXXXXXXLNEIKADGHCLYRAIENQLSLHPGLSCKFSYQQLREMAAAYMRSHAEDFLPFFLSESENDT
F6HQ10__________________KEKQAAELASIGYSSGSGKEKSNLDNLVKAIAGVSVTSQAEHSRPSKSAKRREKRAQQEAAREQRIQEEQSNIVSDRMIENEILEKKLEPLGLAVNDIKPDGHCLYRAVEDQLALLSGGSSPYTYQELREMVAAYMRKHASDFLPFFLSETEGDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain