SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16833

Length: 548 nt

UniGene Fasta

>biog2_v2.0_unigene16833
CAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTAGAAAAGGCCCTCTGCTTCATTGAACAATATGGAGTTAAAGTAGAAGGTATTTTGCGGCAGTCTGCAGATGTTGATGAAGTTGATCGACGAGTTCGTGAATATGAGCAAGGAAGAAATCAATTTTTGCCAGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCGTCCTCACCAGTTCCAGCCCCATGTTGTACCGCACTTTTAGAAGCACATAGAATGGAAGGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACTTTTCCAGAACCCAATCGTCGATTGTTGCAGAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTAAGGCCACTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATCA

Ace file of the UniGene biog2_v2.0_unigene16833

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1346	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Rho GTPase activator, putative	-	-	59%
FL-Next	tr=Putative uncharacterized protein Sb01g034990; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	79%
Blast2go	rho gtpase activation protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	75%
Blast2go	Rho GTPase activator activity	GO:0005100	Molecular Function	75%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	75%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Rho GTPase-activating protein domain	IPR000198	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5WZN8

Fln msg: Distance to subject end: 133 aas, your sequence is shorter than subject: 182 - 484

Fln protein: RRPVKSLVVGRPILLALEDIDGSPSFLEKALCFIEQYGVKVEGILRQSADVDEVDRRVREYEQGRNQFLPDEDAHVVGDCIKHVLRELPSSPVPAPCCTALLEAHRMEGKEARIAAMRLAVAETFPEPNRRLLQRVLKMMHAVASHTSENRMTSSAVAACMAPLLLRPLLAGECELEDESDI

Protein Length: 183

Fln nts: CAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTAGAAAAGGCCCTCTGCTTCATTGAACAATATGGAGTTAAAGTAGAAGGTATTTTGCGGCAGTCTGCAGATGTTGATGAAGTTGATCGACGAGTTCGTGAATATGAGCAAGGAAGAAATCAATTTTTGCCAGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCGTCCTCACCAGTTCCAGCCCCATGTTGTACCGCACTTTTAGAAGCACATAGAATGGAAGGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACTTTTCCAGAACCCAATCGTCGATTGTTGCAGAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTAAGGCCACTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATCA

Fln Alignment:

biogeco2_mira_c14538___RRPVKSLVVGRPILLALEDIDGSPSFLEKALCFIEQYGVKVEGILRQSADVDEVDRRVREYEQGRNQFLPDEDAHVVGDCIKHVLRELPSSPVPAPCCTALLEAHRMEGKEARIAAMRLAVAETFPEPNRRLLQRVLKMMHAVASHTSENRMTSSAVAACMAPLLLRPLLAGECELEDESDI
C5WZN8__________________KRPIKSLVTGRPILLALEDIDGSPSFLEKALRFLEKHGIKVEGILRQAADVEEVDRRLQEYEQGRTEFSADEDAHIVGDCVKHVLRELPSSPVPASCCTALLEAFRLETKDARINAMRSAISETFPEPNRRLLQRILKMMHTIASHTSENRMTASAVAACMAPLLLRPLLAGECEMDEVFDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain