SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16802

Length: 402 nt

UniGene Fasta

>biog2_v2.0_unigene16802
ATGGGGGTGTGAGCGATGCCATCTCGATGGGCACCAGAGGCATGAGCTACAGCTTGCAGTCCAGAGACCTCATTGCTGATAGCATTGAGACCGTCATGGGCGCACAGTGGTACGATGCCAATATCTCCCTACCTGGTTGTGACAAAATATGCCTGGTACCCTTATGGCAATGGGACGCCTCAATCGACCTAGCATTATGGTTTATGGTGGGACCATTAAGCCTGGGCATTTCCAAGGTCACACCTACGACATAATATCAGCCTTTCAGTGCTATGGGGAATATGTCAATGGGTCAATCACTGATGAGCAGCGGATGGATGTGGTGCGCAATTCTTGTCCTGGTGCAGGAGCATGTGGTGGCATGTATACAGCCAATACCATGGCAAGTGCAATTGAGACCAT

Ace file of the UniGene biog2_v2.0_unigene16802

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9692	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	dihydroxy-acid dehydratase [Arabidopsis thaliana] gb\|AAL48233.1\|AF446360_1 AT3g23940/F14O13_13 [Arabidopsis thaliana] dbj\|BAB03011.1\| dihydroxy-acid dehydratase [Arabidopsis thaliana] gb\|AAN41372.1\| putative dihydroxyacid dehydratase [Arabidopsis thaliana	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	91%
Blast2go	dihydroxy-acid dehydratase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydroxy-acid dehydratase.	EC:4.2.1.9	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	91%
Blast2go	Pantothenate and CoA biosynthesis	00770	91%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	91%
Blast2go	isoleucine biosynthetic process	GO:0009097	Biological Process	91%
Blast2go	valine biosynthetic process	GO:0009099	Biological Process	91%
Blast2go	copper ion binding	GO:0005507	Molecular Function	91%
Blast2go	dihydroxy-acid dehydratase activity	GO:0004160	Molecular Function	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dihydroxy-acid dehydratase	IPR004404	-	0.0	-
Sma3	Dihydroxy-acid/6-phosphogluconate dehydratase	IPR000581	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HS67

Fln msg: Overlapping hits, possible frame ERROR between 146 and 143, Distance to subject end: 347 aas, your sequence is shorter than subject: 133 - 610

Fln protein: GGVSDAISMGTRGMSYSLQSRDLIADSIETVMGAQWYDANISLPGCxxxMPGTLMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIISAFQCYGEYVNGSITDEQRMDVVRNSCPGAGACGGMYTANTMASAIET

Protein Length: 134

Fln nts: ATGGGGGTGTGAGCGATGCCATCTCGATGGGCACCAGAGGCATGAGCTACAGCTTGCAGTCCAGAGACCTCATTGCTGATAGCATTGAGACCGTCATGGGCGCACAGTGGTACGATGCCAATATCTCCCTACCTGGTTGTxxxxxxxxxATGCCTGGTACCCTTATGGCAATGGGACGCCTCAATCGACCTAGCATTATGGTTTATGGTGGGACCATTAAGCCTGGGCATTTCCAAGGTCACACCTACGACATAATATCAGCCTTTCAGTGCTATGGGGAATATGTCAATGGGTCAATCACTGATGAGCAGCGGATGGATGTGGTGCGCAATTCTTGTCCTGGTGCAGGAGCATGTGGTGGCATGTATACAGCCAATACCATGGCAAGTGCAATTGAGACCAT

Fln Alignment:

biogeco2_mira_c14502___GVSDAISMGTRGMSYSLQSRDLIADSIETVMGAQWYDANISLPGCDxNMPGTLMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIISAFQCYGEYVNGSITDEQRMDVVRNSCPGAGACGGMYTANTMASAIE
F6HS67__________________GVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDxNMPGTIMAMGRLNRPSIMVYGGAIKPGHFQGHTYDIISAFQVYGEFVSGSITDEQRMNVVRNSCPGAGACGGMYTANTMASAIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain