SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16787

Length: 302 nt

UniGene Fasta

>biog2_v2.0_unigene16787
ATGGGTAATATCATTACCGAAGTTCATCCTAGCTTAGGCGATTCGGTGGGATTCAGTCAAAAAGTATTAGCAATGATACCTTGGCCAGGCTAGCCAGAACAGTGCAATCGTTAAAGGAGGAGAAGAAGCAAAGGTTGCAAAAGCTTCAAGAACTAGGGACTTCACTGACAGAATTGTGGAATCTAATGGATACCCCTATGGAAGAACAAAATTTATTTGATCATGTGACTTGCAACATTTCAGCATCTGTGGAGGAGGTCACGGTCCCAGGTGCACTTGCTATTGATATTATCGAACAGGCT

Ace file of the UniGene biog2_v2.0_unigene16787

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8895	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	microtubule-associated proteins 65-1	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	anaphase	GO:0051322	Biological Process	82%
Blast2go	microtubule bundle formation	GO:0001578	Biological Process	82%
Blast2go	cytokinesis	GO:0000910	Biological Process	82%
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	82%
Blast2go	microtubule nucleation	GO:0007020	Biological Process	82%
Blast2go	positive regulation of microtubule polymerization	GO:0031116	Biological Process	82%
Blast2go	microtubule binding	GO:0008017	Molecular Function	82%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	82%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	82%
Blast2go	preprophase band	GO:0009574	Cellular Component	82%
Blast2go	spindle	GO:0005819	Cellular Component	82%
Blast2go	phragmoplast	GO:0009524	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 293 aas, your sequence is shorter than subject: 100 - 596

Fln protein: G*YHYRSSS*LRRFGGIQSKSISNDTLARLARTVQSLKEEKKQRLQKLQELGTSLTELWNLMDTPMEEQNLFDHVTCNISASVEEVTVPGALAIDIIEQA

Protein Length: 101

Fln nts: ATGGGTAATATCATTACCGAAGTTCATCCTAGCTTAGGCGATTCGGTGGGATTCAGTCAAAAAGTATTAGCAATGATACCTTGGCCAGGCTAGCCAGAACAGTGCAATCGTTAAAGGAGGAGAAGAAGCAAAGGTTGCAAAAGCTTCAAGAACTAGGGACTTCACTGACAGAATTGTGGAATCTAATGGATACCCCTATGGAAGAACAAAATTTATTTGATCATGTGACTTGCAACATTTCAGCATCTGTGGAGGAGGTCACGGTCCCAGGTGCACTTGCTATTGATATTATCGAACAGGCT

Fln Alignment:

biogeco2_mira_c14485___GIQSKSISNDTLARLARTVXXXXXXXXXXXXXXXXXGTSLTELWNLMDTPMEEQNLFDHVTCNISASVEEVTVPGALAIDIIEQA
D5AC28__________________GNQSKSISNDTLAKLAETVESLKEEKQRRLQKIQELGTTLIELWNLMDITMGEQKHFDHVTCYISASVDEVSMPRALASNIIDQA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
239		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain