SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16782

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16782
ATGGGGGGAAACATGGTATTGGAATCATCCATTTGCGATTCAGTTATGCTCTTATGGCCGGCCAAAGCTCCAACAAAGAGCATTTGTTCTCTAACTGTTACAAGTGTCCATGCTGAGGCCCCAATCTTTGCATTCCATTCTAAAATTTCGCTCGGCTTTGACCCTGAACCCTTTCCCTTCCCAACCCGCCGGCGTGCTATCAGCCTTTCCCAAGTTCAAAAGTCTGTCTTTCTACCCGAGAATCAACGCCATGAGCGGAAGAACTGTCACGGACGCCTTGATGGGAGATGCCCGTAAAGCCTCCGAGAAGAAAGGCCGGCCACCATTAAAGCACACGGCCAAGGAAAAGGAAGCCGCCAAGAAGGCCGTCGTAGCCAAAGAGGCCGAACAAGGCGCTGTAGCTGCTCCGTCCGTTGACGATAAGATTGCCCAGCTCTCGAAGAAGGCCTCCGAGTTCGAACCCAAGGCCGCCGCTTTCTGGAACGACGGCGAGCACGTTCCCTTCCTGTTTCTTGCCCGAGCCCTAGACTTGATAT

Ace file of the UniGene biog2_v2.0_unigene16782 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37228	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA ligase n=1 Tax=Sorghum bicolor RepID=C5WXG6_SORBI	-	-	3.0e-12	78%
FL-Next	sp=DNA ligase; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	74%
Blast2go	dna ligase	-	-	2.76907e-13	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	2.76907e-13	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.76907e-13	76%

Source	InterPros	Term	Type	Identity
Sma3	DNA ligase, ATP-dependent	IPR000977	-	-
Sma3	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	-
Sma3	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5WXG6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 576 aas, your sequence is shorter than subject: 178 - 905

Fln protein: WGETWYWNHPFAIQLCSYGRPKLQQRAFVL*LLQVSMLRPQSLHSILKFRSALTLNPFPSQPAGVLSAFPKFKSLSFYPRINAMSGRTVTDALMGDARKASEKKGRPPLKHTAKEKEAAKKAVVAKEAEQGAVAAPSVDDKIAQLSKKASEFEPKAAAFWNDGEHVPFLFLARALDLI

Protein Length: 179

Fln nts: ATGGGGGGAAACATGGTATTGGAATCATCCATTTGCGATTCAGTTATGCTCTTATGGCCGGCCAAAGCTCCAACAAAGAGCATTTGTTCTCTAACTGTTACAAGTGTCCATGCTGAGGCCCCAATCTTTGCATTCCATTCTAAAATTTCGCTCGGCTTTGACCCTGAACCCTTTCCCTTCCCAACCCGCCGGCGTGCTATCAGCCTTTCCCAAGTTCAAAAGTCTGTCTTTCTACCCGAGAATCAACGCCATGAGCGGAAGAACTGTCACGGACGCCTTGATGGGAGATGCCCGTAAAGCCTCCGAGAAGAAAGGCCGGCCACCATTAAAGCACACGGCCAAGGAAAAGGAAGCCGCCAAGAAGGCCGTCGTAGCCAAAGAGGCCGAACAAGGCGCTGTAGCTGCTCCGTCCGTTGACGATAAGATTGCCCAGCTCTCGAAGAAGGCCTCCGAGTTCGAACCCAAGGCCGCCGCTTTCTGGAACGACGGCGAGCACGTTCCCTTCCTGTTTCTTGCCCGAGCCCTAGACTTGATAT

Fln Alignment:

biogeco2_mira_c14480___QLSKKASEFEPKAAAFWNDGEHVPFLFLARALDLI
C5WXG6__________________ELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain